RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 DYRK2Q92630 601 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 SPSB4Q96A44 273 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 MOAP1Q96BY2 351 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 C14orf79Q96F83 325 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 SCMH1Q96GD3 660 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 FCRL1Q96LA6 429 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 TMEM175Q9BSA9 504 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 TMEM38AQ9H6F2 299 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 PLAC1Q9HBJ0 212 aa8.32□□□□□ -1.08
VPS13D-212ENST00000543766 DICER1Q9UPY3 1922 aaKnown RBP8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ITPKAP23677 461 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ELK3P41970 407 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 OR3A1P47881 315 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 MMP15P51511 669 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 EMP2P54851 167 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 GAGE1Q13065 139 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 SMIM21Q3B7S5 101 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 PARP15Q460N3 678 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 SYT6Q5T7P8 510 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-212ENST00000543766 CCDC190Q86UF4 302 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 RXFP4Q8TDU9 374 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DCAF4Q8WV16 495 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 SLITRK2Q9H156 845 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 NIPAL2Q9H841 368 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 LTB4R2Q9NPC1 389 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 WBP1LQ9NX94 342 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 GAR1Q9NY12 217 aaKnown RBP8.31□□□□□ -1.08
VPS13D-212ENST00000543766 RNF150Q9ULK6 438 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 PDE10AQ9Y233 779 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 LOXHD1Q8IVV2 1947 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 A0A1B0GW55 424 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 CYB561D2O14569 222 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 PIAS1O75925 651 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 CYBBP04839 570 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 HOXC4P09017 264 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-212ENST00000543766 CSF1P09603 554 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 OR8U9P0C7N5 309 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DUX4L2P0CJ85 424 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DUX4L3P0CJ86 424 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DUX4L4P0CJ87 422 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DUX4L5P0CJ88 424 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DUX4L6P0CJ89 424 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DUX4L7P0CJ90 424 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 SOX2P48431 317 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 LIMK2P53671 638 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 MXD1Q05195 221 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 MZT1Q08AG7 82 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 HIF1AQ16665 826 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 GOLGA7BQ2TAP0 167 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ZNF404Q494X3 552 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 PYY3Q5JQD4 70 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 LGSNQ5TDP6 509 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 SLC35D2Q76EJ3 337 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 B3GNT8Q7Z7M8 397 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 PUSL1Q8N0Z8 303 aaKnown RBP8.31□□□□□ -1.08
VPS13D-212ENST00000543766 RHOXF1Q8NHV9 184 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 TMEM234Q8WY98 164 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 SLC41A3Q96GZ6 507 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 PTCHD1Q96NR3 888 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ASPNQ9BXN1 380 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ZNF436Q9C0F3 470 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DSN1Q9H410 356 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 CHST11Q9NPF2 352 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ADAP2Q9NPF8 381 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DUX4Q9UBX2 424 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 MARCOQ9UEW3 520 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ADAMTSL1Q8N6G6 1762 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 TCRBV3S1A0A5B6 114 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ACVR1BP36896 505 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 SREBF1P36956 1147 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 AQP2P41181 271 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ZNF763Q0D2J5 394 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 CATSPEREQ5SY80 951 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 ZNF613Q6PF04 617 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 IGDCC3Q8IVU1 814 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DAW1Q8N136 415 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 DNAAF1Q8NEP3 725 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 GRAPLQ8TC17 118 aaPredicted RBP8.31□□□□□ -1.08
VPS13D-212ENST00000543766 CD200R1Q8TD46 325 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 SPSB1Q96BD6 273 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 MIXL1Q9H2W2 232 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 CSNK1G1Q9HCP0 422 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 TREX1Q9NSU2 369 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 TMEM184CQ9NVA4 438 aa8.31□□□□□ -1.08
VPS13D-212ENST00000543766 C2orf78A6NCI8 922 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 IGLON5A6NGN9 336 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 FIGNL2A6NMB9 653 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 FKTNO75072 461 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 CEACAM1P13688 526 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 ZNF30P17039 623 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 EIF4HQ15056 248 aaKnown RBP8.3□□□□□ -1.08
VPS13D-212ENST00000543766 FAM183BPQ6ZVS7 135 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 GALNT10Q86SR1 603 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 BATF2Q8N1L9 274 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 OR8D4Q8NGM9 314 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 BCL2L2Q92843 193 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-212ENST00000543766 FCRL2Q96LA5 508 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-212ENST00000543766 CHST5Q9GZS9 411 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 COMMD4Q9H0A8 199 aa8.3□□□□□ -1.08
VPS13D-212ENST00000543766 SLC32A1Q9H598 525 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms