RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 ARSBP15848 533 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 AMD1P17707 334 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 SDC1P18827 310 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 TACR1P25103 407 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 APEX1P27695 318 aaKnown RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 TBPL1P62380 186 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 SKP1P63208 163 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 VLDLRP98155 873 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 HNRNPA0Q13151 305 aaKnown RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 DDX39BQ13838 428 aaKnown RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 LASP1Q14847 261 aaKnown RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 ANGPT1Q15389 498 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 ZNF776Q68DI1 518 aaPredicted RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 ADNP2Q6IQ32 1131 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 SLCO4C1Q6ZQN7 724 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 PDZD3Q86UT5 571 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 TGIF2LXQ8IUE1 241 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 MCEMP1Q8IX19 187 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 HDDC3Q8N4P3 179 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 LMNTD1Q8N9Z9 388 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 OR52J3Q8NH60 311 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 WFDC12Q8WWY7 111 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 WDR34Q96EX3 536 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 DPY30Q9C005 99 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 CLEC4MQ9H2X3 399 aaPredicted RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 ZNF576Q9H609 170 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 MAGIXQ9H6Y5 334 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 TM7SF3Q9NS93 570 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 TAS2R10Q9NYW0 307 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 ELF5Q9UKW6 265 aaPredicted RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 MTCH2Q9Y6C9 303 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 TRBV5-3A0A0A0MS03 114 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 BLACEA4D250 179 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 PRR19A6NJB7 356 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 SHISA7A6NL88 538 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 TO15178 435 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 B3GALT4O96024 378 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 CSTAP01040 98 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 ERGP11308 486 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 NPPBP16860 134 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 ZP3P21754 424 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF81P51508 661 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 C2orf80Q0P641 193 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 HFEQ30201 348 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 LBHQ53QV2 105 aaPredicted RBP7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 XKR6Q5GH73 641 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF57Q68EA5 555 aaPredicted RBP7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 EIF3MQ7L2H7 374 aaKnown RBP7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 RRM2BQ7LG56 351 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 WDSUB1Q8N9V3 476 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 B3GNT7Q8NFL0 401 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 ST7LQ8TDW4 575 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 NEIL2Q969S2 332 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 UPRTQ96BW1 309 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 MED8Q96G25 268 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 BSCL2Q96G97 398 aaPredicted RBP7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 SORBS1Q9BX66 1292 aaKnown RBP7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 C1QTNF2Q9BXJ5 285 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 POTEKPQ9BYX7 375 aa7.46□□□□□ -1.22
PDLIM5-221ENST00000542407 RFPL4AA6NLU0 287 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 RFPL4AL1F8VTS6 287 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 ORC5O43913 435 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 UBXN7O94888 489 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 ETHE1O95571 254 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 PTBP3O95758 552 aaKnown RBP7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 CBR1P16152 277 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 PTPN6P29350 595 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 TACR3P29371 465 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 NTSR1P30989 418 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 CLDN8P56748 225 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 IRF8Q02556 426 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 EXOSC2Q13868 293 aaKnown RBP7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNHIT3Q15649 155 aaPredicted RBP7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 SSX1Q16384 188 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC27A4Q6P1M0 643 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 C1orf94Q6P1W5 598 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 OR6M1Q8NGM8 313 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 OR13C3Q8NGS6 347 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 LIPHQ8WWY8 451 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 RBPMSQ93062 196 aaKnown RBP7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 TMEM41AQ96HV5 264 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 MEGF10Q96KG7 1140 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF768Q9H5H4 540 aaKnown RBP7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 SLAMF7Q9NQ25 335 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 SERHLQ9NQF3 203 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 SPHK1Q9NYA1 384 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 COMMD3Q9UBI1 195 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 KCNK7Q9Y2U2 307 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 PRAMEF33A0A0G2JMD5 474 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 A0A1W2PN81 502 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 ISM1B1AKI9 464 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 TMEM229AB2RXF0 380 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 B9A039 149 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 INMT-MINDY4F8WBC2 141 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 TEX46H3BTG2 121 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC30A4O14863 429 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 PRAMEF10O60809 474 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 PLATP00750 562 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 RAF1P04049 648 aa7.45□□□□□ -1.22
PDLIM5-221ENST00000542407 CHRNA7P36544 502 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms