RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SHISA9B4DS77 424 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 SCDO00767 359 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ZNF195O14628 629 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 LSM1O15116 133 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 TMCC2O75069 709 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 GLRA3O75311 464 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 H6PDO95479 791 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ALOX5P09917 674 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 LINC00032P0C843 101 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ME2P23368 584 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 IL32P24001 234 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ELK4P28324 431 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ADH6P28332 368 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 C21orf58P58505 322 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 DNAJB13P59910 316 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 POU6F2P78424 691 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 TMEM176BQ3YBM2 270 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 TMEM201Q5SNT2 666 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 HMBOX1Q6NT76 420 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 TRMT10CQ7L0Y3 403 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 OR7A2PQ8NGA2 310 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 PIWIL2Q8TC59 973 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ZBED6CLQ96FA7 236 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ZNF300Q96RE9 604 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 PSD2Q9BQI7 771 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 BTBD2Q9BX70 525 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ACSS1Q9NUB1 689 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 ZCCHC3Q9NUD5 404 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 STOML1Q9UBI4 398 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 PLCE1Q9P212 2302 aa13.7□□□□□ -0.22
CLSTN3-213ENST00000541953 IGHV4-30-2A0A087WSY4 118 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 A0A1W2PP18 115 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 ESPNB1AK53 854 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 NPIPB9F8W1W9 429 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 CD5LO43866 347 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 CHRNGP07510 517 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 LAMP1P11279 417 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 BCKDHAP12694 445 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 PRKCAP17252 672 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 SPOCK1Q08629 439 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 PCLAFQ15004 111 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 GALNTL6Q49A17 601 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 KLHL26Q53HC5 615 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 LIPMQ5VYY2 423 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 KANK2Q63ZY3 851 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 CDC73Q6P1J9 531 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 LRIG3Q6UXM1 1119 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 BHLHA15Q7RTS1 189 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 C10orf107Q8IVU9 208 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 ZFP28Q8NHY6 868 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 GPR119Q8TDV5 335 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 ZFP90Q8TF47 636 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 NANOS1Q8WY41 292 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 ZNF75CPQ92670 426 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 ANP32BQ92688 251 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 HTRA1Q92743 480 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 KISS1RQ969F8 398 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 GTPBP3Q969Y2 492 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 CPNE4Q96A23 557 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 GATA5Q9BWX5 397 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 POTEKPQ9BYX7 375 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 ESRP2Q9H6T0 727 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 GPATCH2Q9NW75 528 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 DCDC2Q9UHG0 476 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 DNAJC15Q9Y5T4 150 aa13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 YLPM1P49750 1951 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-213ENST00000541953 RNF212BA8MTL3 300 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 SLC28A1O00337 649 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 AZIN1O14977 448 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 SMAD9O15198 467 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 NUDT14O95848 222 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 YES1P07947 543 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 HPGDP15428 266 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 IDUAP35475 653 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 RNPS1Q15287 305 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 STK11Q15831 433 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 CFAP157Q5JU67 520 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 DCST2Q5T1A1 773 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 MISPQ8IVT2 679 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 CCDC126Q96EE4 140 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 CHMP6Q96FZ7 201 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 METTL2AQ96IZ6 378 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 QRSL1Q9H0R6 528 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 PIGUQ9H490 435 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 SERHL2Q9H4I8 314 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 BCO1Q9HAY6 547 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 YAE1D1Q9NRH1 226 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 KCNE5Q9UJ90 142 aa13.68□□□□□ -0.22
CLSTN3-213ENST00000541953 SCAMP2O15127 329 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 RGS14O43566 566 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 BCAS1O75363 584 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 PRKD3O94806 890 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 CPA3P15088 417 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 IGHV1-2P23083 117 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 ARRB2P32121 409 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 EIF1P41567 113 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 OR3A2P47893 321 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 SERPINB4P48594 390 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 P2RX1P51575 399 aa13.67□□□□□ -0.22
CLSTN3-213ENST00000541953 RPS26P62854 115 aaKnown RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms