RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 VPS26BQ4G0F5 336 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 ARL13AQ5H913 290 aaPredicted RBP10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF544Q6NX49 715 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 C12orf54Q6X4T0 127 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 MEX3DQ86XN8 651 aaKnown RBP10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 DEPDC4Q8N2C3 294 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 PSD2Q9BQI7 771 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 PRR14Q9BWN1 585 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 CXorf36Q9H7Y0 433 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 EML4Q9HC35 981 aaKnown RBP10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 MIEF1Q9NQG6 463 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 UBQLN4Q9NRR5 601 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 KLHL9Q9P2J3 617 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 WBP11Q9Y2W2 641 aaKnown RBP10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 PMF1-BGLAPU3KQ54 211 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 MEGF8Q7Z7M0 2845 aa10.25□□□□□ -0.77
CLSTN3-209ENST00000539982 TENM1Q9UKZ4 2725 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 A0A1W2PQD3 144 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 A8MT66 165 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 NDUFS8O00217 210 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 KIAA0513O60268 411 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 LY6HO94772 140 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 TGFAP01135 160 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 COX5AP20674 150 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 HMOX2P30519 316 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 NR4A2P43354 598 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 MAGEA12P43365 314 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 PRIM2P49643 509 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 RAC3P60763 192 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF763Q0D2J5 394 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 FOXF1Q12946 379 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 TRADDQ15628 312 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 FAM71E1Q6IPT2 247 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 C8orf74Q6P047 294 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 KLHL17Q6TDP4 642 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 TMEM151AQ8N4L1 468 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF433Q8N7K0 673 aaPredicted RBP10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 CDRT4Q8N9R6 151 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 OR6Y1Q8NGX8 325 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 CEP70Q8NHQ1 597 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 FBXO27Q8NI29 283 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 FBXO25Q8TCJ0 367 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 RHOXF2Q9BQY4 288 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 INPP5KQ9BT40 448 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 MRPL46Q9H2W6 279 aaKnown RBP10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 COQ10BQ9H8M1 238 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 EQTNQ9NQ60 294 aa10.24□□□□□ -0.77
CLSTN3-209ENST00000539982 IGHV3-15A0A0B4J1V0 119 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 SERTM1A2A2V5 107 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF724A8MTY0 619 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 C9JVG2 144 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 SCDO00767 359 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 RAD51CO43502 376 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 SUPT7LO94864 414 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 KCNK2O95069 426 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 SBK3P0C264 359 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 APEHP13798 732 aaKnown RBP10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 EDNRAP25101 427 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 HTR6P50406 440 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 PDLIM4P50479 330 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF83P51522 516 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 SPOCK1Q08629 439 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 RASGEF1BQ0VAM2 473 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 CD226Q15762 336 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 UNC50Q53HI1 259 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 B3GLCTQ6Y288 498 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 GPRIN3Q6ZVF9 776 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF551Q7Z340 670 aaPredicted RBP10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZAR1Q86SH2 424 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF100Q8IYN0 542 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ATP6V1C2Q8NEY4 427 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 CDC26Q8NHZ8 85 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZFP90Q8TF47 636 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF75CPQ92670 426 aaPredicted RBP10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF775Q96BV0 537 aaPredicted RBP10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 C1orf159Q96HA4 380 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF382Q96SR6 550 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 PIMREGQ9BSJ6 248 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ADAM19Q9H013 955 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 C12orf65Q9H3J6 166 aaKnown RBP10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 MYNNQ9NPC7 610 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 SLC25A15Q9Y619 301 aa10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 GPC6Q9Y625 555 aaPredicted RBP10.23□□□□□ -0.77
CLSTN3-209ENST00000539982 ESYT3A0FGR9 886 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 CIB4A0PJX0 185 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 CCDC151A5D8V7 595 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 CYTIPO60759 359 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 APOBEC3AP31941 199 aaPredicted RBP10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 SERPINB4P48594 390 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 PRKAG1P54619 331 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF117Q03924 483 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 CHRNEQ04844 493 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 CR1LQ2VPA4 569 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 SPDYAQ5MJ70 313 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 ZNF678Q5SXM1 525 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 FBXW9Q5XUX1 488 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 BHLHB9Q6PI77 547 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 ZDHHC24Q6UX98 284 aa10.22□□□□□ -0.77
CLSTN3-209ENST00000539982 MTERF4Q7Z6M4 381 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms