RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF814B7Z6K7 855 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 ETV2O00321 342 aaPredicted RBP12.04□□□□□ -0.48
SS18-204ENST00000539244 ZNF195O14628 629 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 RGS14O43566 566 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 NTN1O95631 604 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 ADAP00813 363 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 FESP07332 822 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 NEFHP12036 1026 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 P2RX1P51575 399 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 CCDC153Q494R4 210 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 KLHL26Q53HC5 615 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 CFAP157Q5JU67 520 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 CCNJQ5T5M9 372 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 CLEC6AQ6EIG7 209 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 ALKBH2Q6NS38 261 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 HMBOX1Q6NT76 420 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 CBLN3Q6UW01 205 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 Q6ZT83 130 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 SSX8Q7RTT4 187 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 SZRD1Q7Z422 152 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 ATG4DQ86TL0 474 aaPredicted RBP12.04□□□□□ -0.48
SS18-204ENST00000539244 MNS1Q8NEH6 495 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 OR2T11Q8NH01 316 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 ZFP90Q8TF47 636 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 FAM120BQ96EK7 910 aaKnown RBP12.04□□□□□ -0.48
SS18-204ENST00000539244 TSSK3Q96PN8 268 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 TRAF4Q9BUZ4 470 aaPredicted RBP12.04□□□□□ -0.48
SS18-204ENST00000539244 PIGUQ9H490 435 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 BARX1Q9HBU1 254 aaPredicted RBP12.04□□□□□ -0.48
SS18-204ENST00000539244 OXSMQ9NWU1 459 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 ING1Q9UK53 422 aaPredicted RBP12.04□□□□□ -0.48
SS18-204ENST00000539244 TMED5Q9Y3A6 229 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 PTGDR2Q9Y5Y4 395 aa12.04□□□□□ -0.48
SS18-204ENST00000539244 PLCE1Q9P212 2302 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 GOLGA8QA0A0J9YX86 632 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 GOLGA8OA6NCC3 632 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 GOLGA8NF8WBI6 632 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 AKAP10O43572 662 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 PLIN3O60664 434 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 IFNA2P01563 188 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 CD8AP01732 235 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 HMGN2P05204 90 aaKnown RBP12.03□□□□□ -0.48
SS18-204ENST00000539244 PRKCAP17252 672 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 ASMTP46597 345 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 OR3A2P47893 321 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 RAC3P60763 192 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 SELENBP1Q13228 472 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 TMEM176BQ3YBM2 270 aaPredicted RBP12.03□□□□□ -0.48
SS18-204ENST00000539244 RFTN2Q52LD8 501 aaPredicted RBP12.03□□□□□ -0.48
SS18-204ENST00000539244 SLC25A53Q5H9E4 307 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 BHLHA15Q7RTS1 189 aaPredicted RBP12.03□□□□□ -0.48
SS18-204ENST00000539244 ZNF619Q8N2I2 560 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 CEP112Q8N8E3 955 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 ZNF527Q8NB42 609 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 FBXO27Q8NI29 283 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 PSMA8Q8TAA3 256 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 PHOSPHO1Q8TCT1 267 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 MRGPRX4Q96LA9 322 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 PSD2Q9BQI7 771 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 TXLNGYQ9BZA5 131 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 HOXD1Q9GZZ0 328 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 KLHL9Q9P2J3 617 aa12.03□□□□□ -0.48
SS18-204ENST00000539244 NUP214P35658 2090 aaPredicted RBP12.02□□□□□ -0.48
SS18-204ENST00000539244 ALPK2Q86TB3 2170 aa12.02□□□□□ -0.48
SS18-204ENST00000539244 A0A096LNT2 108 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 A0A1W2PPM1 405 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 RNF212BA8MTL3 300 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 SHISA9B4DS77 424 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 NPIPB9F8W1W9 429 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 H3BNH8 94 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 LSM1O15116 133 aaKnown RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 OIP5O43482 229 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 ADAM11O75078 769 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 NDUFS7O75251 213 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 DDX5P17844 614 aaKnown RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 COX5AP20674 150 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 ENPP1P22413 925 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 CRHR1P34998 444 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 RPL38P63173 70 aaKnown RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 FAPQ12884 760 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 LASP1Q14847 261 aaKnown RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 TOMM34Q15785 309 aaPredicted RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 NRF1Q16656 503 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 TIMM23BQ5SRD1 257 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.02□□□□□ -0.49
SS18-204ENST00000539244 LIPMQ5VYY2 423 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 CDC73Q6P1J9 531 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 LRIG3Q6UXM1 1119 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 R3HCC1LQ7Z5L2 792 aaKnown RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 P2RY8Q86VZ1 359 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 HOMEZQ8IX15 550 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 PHC2Q8IXK0 858 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 CLHC1Q8NHS4 586 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 GPR119Q8TDV5 335 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 JADE3Q92613 823 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 CDS1Q92903 461 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 OTUB1Q96FW1 271 aaPredicted RBP12.02□□□□□ -0.49
SS18-204ENST00000539244 TUBB1Q9H4B7 451 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 ALG2Q9H553 416 aa12.02□□□□□ -0.49
SS18-204ENST00000539244 CXorf36Q9H7Y0 433 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms