RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 TMEM163Q8TC26 289 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 LMX1AQ8TE12 382 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 RBM18Q96H35 190 aaKnown RBP10.89□□□□□ -0.67
USF1-208ENST00000528768 SH3YL1Q96HL8 342 aaPredicted RBP10.89□□□□□ -0.67
USF1-208ENST00000528768 HS6ST2Q96MM7 605 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 CD180Q99467 661 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 MGLLQ99685 303 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 LRRC61Q9BV99 259 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 SIAEQ9HAT2 523 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 TMEM27Q9HBJ8 222 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 FBXO8Q9NRD0 319 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 MAN2C1Q9NTJ4 1040 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 IRAK4Q9NWZ3 460 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 CCDC59Q9P031 241 aaKnown RBP10.89□□□□□ -0.67
USF1-208ENST00000528768 H2AFY2Q9P0M6 372 aaPredicted RBP10.89□□□□□ -0.67
USF1-208ENST00000528768 TESQ9UGI8 421 aaKnown RBP10.89□□□□□ -0.67
USF1-208ENST00000528768 TUBD1Q9UJT1 453 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 U3KQA8 63 aa10.89□□□□□ -0.67
USF1-208ENST00000528768 A0A1W2PS29 197 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 CPED1A4D0V7 1026 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 PLD2O14939 933 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 PRODHO43272 600 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 KIAA0513O60268 411 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 FCMRO60667 390 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 CTNSO60931 367 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 EPPINO95925 133 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 PTHP01270 115 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 DBTP11182 482 aaKnown RBP10.88□□□□□ -0.67
USF1-208ENST00000528768 NID1P14543 1247 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 ST6GAL1P15907 406 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 GADD45AP24522 165 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 GABRA3P34903 492 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 LIPAP38571 399 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 NCS1P62166 190 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 EEF1A1P68104 462 aaKnown RBP10.88□□□□□ -0.67
USF1-208ENST00000528768 ID2Q02363 134 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 ZNF91Q05481 1191 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 RAB40BQ12829 278 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 SLC13A2Q13183 592 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 FAM53BQ14153 422 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 NR0B2Q15466 257 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 SPHARQ15513 63 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 TBR1Q16650 682 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 RGS21Q2M5E4 152 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 PRICKLE4Q2TBC4 344 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 ZNF404Q494X3 552 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 TRMT12Q53H54 448 aaKnown RBP10.88□□□□□ -0.67
USF1-208ENST00000528768 ZNF836Q6ZNA1 936 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 GDF7Q7Z4P5 450 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 GALNT12Q8IXK2 581 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 NLGN4XQ8N0W4 816 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 VWA5B2Q8N398 1253 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 SLC15A4Q8N697 577 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 OR52L1Q8NGH7 329 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 OR6Q1Q8NGQ2 317 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 ZDHHC12Q96GR4 267 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 DGAT2Q96PD7 388 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 ZNF559Q9BR84 538 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 STRADBQ9C0K7 418 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 CHRNA10Q9GZZ6 450 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 QRSL1Q9H0R6 528 aaKnown RBP10.88□□□□□ -0.67
USF1-208ENST00000528768 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.88□□□□□ -0.67
USF1-208ENST00000528768 WDR70Q9NW82 654 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 MAT2BQ9NZL9 334 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 DNAJC27Q9NZQ0 273 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 SELENONQ9NZV5 590 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 SEC14L4Q9UDX3 406 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 KLHL3Q9UH77 587 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 OSGIN1Q9UJX0 560 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 DIMT1Q9UNQ2 313 aaKnown RBP10.88□□□□□ -0.67
USF1-208ENST00000528768 CFL2Q9Y281 166 aa10.88□□□□□ -0.67
USF1-208ENST00000528768 MRPS2Q9Y399 296 aaKnown RBP10.88□□□□□ -0.67
USF1-208ENST00000528768 EXOSC1Q9Y3B2 195 aaKnown RBP10.88□□□□□ -0.67
USF1-208ENST00000528768 PNMA8CA0A1B0GUJ8 204 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 SAGE2PA6NJ88 616 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 SLC9B1P1A6NJY1 282 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 SGK494L7N484 410 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 M0R129 80 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 DYRK3O43781 588 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 LDB3O75112 727 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 RDH16O75452 317 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 NKX2-2O95096 273 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 NSA2O95478 260 aaKnown RBP10.87□□□□□ -0.67
USF1-208ENST00000528768 SCG5P05408 212 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 RPS4Y1P22090 263 aaKnown RBP10.87□□□□□ -0.67
USF1-208ENST00000528768 PSMA1P25786 263 aaKnown RBP10.87□□□□□ -0.67
USF1-208ENST00000528768 OPRL1P41146 370 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 CASRP41180 1078 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 CAPZBP47756 277 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 OMPP47874 163 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 EPHA4P54764 986 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 COPZ1P61923 177 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 SERTAD2Q14140 314 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 TSTQ16762 297 aaKnown RBP10.87□□□□□ -0.67
USF1-208ENST00000528768 PRTGQ2VWP7 1150 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 EXOSC6Q5RKV6 272 aaKnown RBP10.87□□□□□ -0.67
USF1-208ENST00000528768 OLIG3Q7RTU3 272 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 MRGPREQ86SM8 312 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 CARFQ8N187 725 aa10.87□□□□□ -0.67
USF1-208ENST00000528768 SLC43A2Q8N370 569 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms