RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 MAPK14Q16539 360 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 ZMAT1Q5H9K5 638 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 LYPD8Q6UX82 237 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 GPAT4Q86UL3 456 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 OR6M1Q8NGM8 313 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 LHFPL5Q8TAF8 219 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 G6PC3Q9BUM1 346 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 NTMT1Q9BV86 223 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 TNFRSF12AQ9NP84 129 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 KIF13BQ9NQT8 1826 aa12.33□□□□□ -0.43
TCOF1-213ENST00000514442 PRSS38A1L453 326 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 SC5DO75845 299 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 CLEC2LP0C7M8 214 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 PCGF2P35227 344 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 MC3RP41968 323 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 AIMP2Q13155 320 aaKnown RBP12.33□□□□□ -0.44
TCOF1-213ENST00000514442 IGSF11Q5DX21 431 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 SLC6A17Q9H1V8 727 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 IL20RAQ9UHF4 553 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 RAB19A4D1S5 217 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 PRAMEF26H0Y7S4 382 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 TXNL1O43396 289 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 UGDHO60701 494 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 NFYAP23511 347 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-213ENST00000514442 HSD11B1P28845 292 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 SLC19A1P41440 591 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 ADAM8P78325 824 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 LHX8Q68G74 356 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 ZC3H14Q6PJT7 736 aaKnown RBP12.33□□□□□ -0.44
TCOF1-213ENST00000514442 SSX6Q7RTT6 188 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 ZNF550Q7Z398 422 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 ANKRD33Q7Z3H0 272 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 BEST3Q8N1M1 668 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 OR5D16Q8NGK9 328 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 SCARB1Q8WTV0 552 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 FATE1Q969F0 183 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 ELP4Q96EB1 424 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 MFFQ9GZY8 342 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 BRF2Q9HAW0 419 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 DKKL1Q9UK85 242 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.33□□□□□ -0.44
TCOF1-213ENST00000514442 E2F3O00716 465 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 ZNF20P17024 532 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 KIR2DL3P43628 341 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 UGT3A2Q3SY77 523 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 PLK5Q496M5 336 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 AVPI1Q5T686 147 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 LYPD4Q6UWN0 246 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 MFSD6LQ8IWD5 586 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 OR56B4Q8NH76 319 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 RHNO1Q9BSD3 238 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 B3GNT4Q9C0J1 378 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 PRSS16Q9NQE7 514 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 MUTYHQ9UIF7 546 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 ERVK-19Q9WJR5 959 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 LRRTM2O43300 516 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 PPM1BO75688 479 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 MT-ND4P03905 459 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 ZNF627Q7L945 461 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 TMED4Q7Z7H5 227 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 TMEM179BQ7Z7N9 219 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 SPNS2Q8IVW8 549 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 CLRN3Q8NCR9 226 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 GAL3ST3Q96A11 431 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 C10orf90Q96M02 699 aa12.33□□□□□ -0.44
TCOF1-213ENST00000514442 GABRR3A8MPY1 467 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 SGK494L7N484 410 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 ARPC1BO15143 372 aaKnown RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 KCNJ13O60928 360 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 RDH16O75452 317 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 ADRB1P08588 477 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 NUDT7P0C024 238 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 ETV6P41212 452 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 C6orf132Q5T0Z8 1188 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 WDR53Q7Z5U6 358 aaPredicted RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 ADGRG3Q86Y34 549 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 NAXEQ8NCW5 288 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 OR2L5Q8NG80 312 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 OR6N1Q8NGY5 312 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 ADAMTS14Q8WXS8 1223 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 ARL11Q969Q4 196 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 KCMF1Q9P0J7 381 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 UNC119BA6NIH7 251 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 M0R3H8 397 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 B4GALT3O60512 393 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 FMO6PO60774 539 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 UBBP0CG47 229 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 UBCP0CG48 685 aaKnown RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 NAA10P41227 235 aaPredicted RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 GCGRP47871 477 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 GPR85P60893 370 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 RPS27AP62979 156 aaKnown RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 UBA52P62987 128 aaKnown RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 VRK3Q8IV63 474 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 IQCF1Q8N6M8 205 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 TMEM163Q8TC26 289 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 NR4A3Q92570 626 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 NKX6-2Q9C056 277 aaPredicted RBP12.32□□□□□ -0.44
TCOF1-213ENST00000514442 A0A0G2JMP0 313 aa12.32□□□□□ -0.44
TCOF1-213ENST00000514442 TARM1B6A8C7 271 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms