RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 WDR92Q96MX6 357 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF471Q9BX82 626 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ATG5Q9H1Y0 275 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TM7SF3Q9NS93 570 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SIDT1Q9NXL6 827 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 DNMT3BQ9UBC3 853 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 PLEKHA6Q9Y2H5 1048 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 METTL21EPA6NDL7 271 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 NAP1L6A6NFF2 107 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC9B1P1A6NJY1 282 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ARPC5O15511 151 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 C5AR1P21730 350 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 PRKACBP22694 351 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 GZMMP51124 257 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 FABP5Q01469 135 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TCEAL5Q5H9L2 206 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 FAM69AQ5T7M9 428 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 GALNTL5Q7Z4T8 443 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 NKAIN4Q8IVV8 208 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 PLPP6Q8IY26 295 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ZFAND1Q8TCF1 268 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TSACCQ96A04 125 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 DNAJA3Q96EY1 480 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ALG14Q96F25 216 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TMEM43Q9BTV4 400 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TAPBPLQ9BX59 468 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SPNS1Q9H2V7 528 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 PRTFDC1Q9NRG1 225 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SH2B3Q9UQQ2 575 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC35A3Q9Y2D2 325 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 COL11A1P12107 1806 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 C11orf98E9PRG8 122 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 KIAA0355O15063 1070 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 LDB3O75112 727 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 APOC3P02656 99 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 TCRBP04435 133 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 PRKCAP17252 672 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 GRK5P34947 590 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 DUSP6Q16828 381 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SWI5Q1ZZU3 235 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 MRPL2Q5T653 305 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 GLT8D1Q68CQ7 371 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 OR6F1Q8NGZ6 308 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ZDHHC1Q8WTX9 485 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF296Q8WUU4 475 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 PCNPQ8WW12 178 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 ADAMTS14Q8WXS8 1223 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 GHSRQ92847 366 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 UBQLN3Q9H347 655 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 SYNPO2LQ9H987 977 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 IL21Q9HBE4 155 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 COPS7AQ9UBW8 275 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 RCE1Q9Y256 329 aa7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 NUP214P35658 2090 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-216ENST00000512820 PIP5K1CO60331 668 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ELK1P19419 428 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 PTBP1P26599 531 aaKnown RBP eCLIP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 PDX1P52945 283 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 GPR176Q14439 515 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 COL28A1Q2UY09 1125 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 RAB12Q6IQ22 244 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 LSM14AQ8ND56 463 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 OR4C15Q8NGM1 316 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 OR5M3Q8NGP4 307 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 OR56B4Q8NH76 319 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 CHST8Q9H2A9 424 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 METTL17Q9H7H0 456 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 TAS2R3Q9NYW6 316 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 PTTG3PQ9NZH4 202 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 TMEM14AQ9Y6G1 99 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 C13orf42A0A1B0GVH6 325 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ICMTO60725 284 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 SPARCP09486 303 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 FUT1P19526 365 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 PRKAR1BP31321 381 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 KIR2DL3P43628 341 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 PTH2RP49190 550 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 NRG3P56975 720 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 CLDN2P57739 230 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 TPBGQ13641 420 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ESCO2Q56NI9 601 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 KCTD9Q7L273 389 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 ADIPOR2Q86V24 386 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 SIAH3Q8IW03 269 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 PDZD9Q8IXQ8 264 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 GALNT6Q8NCL4 622 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 OR5AK2Q8NH90 309 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 CASTOR1Q8WTX7 329 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 HMGB4Q8WW32 186 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 POTEKPQ9BYX7 375 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 TMEM185BQ9H7F4 350 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 SERTM1A2A2V5 107 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 YY2O15391 372 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 S100A6P06703 90 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 P2RY2P41231 377 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 EVX1P49640 407 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 RUNX3Q13761 415 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 EXOSC7Q15024 291 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 IRF4Q15306 451 aa7.85□□□□□ -1.15
LIMCH1-216ENST00000512820 PCGF3Q3KNV8 242 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms