RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ZNF767PQ75MW2 155 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 OR8H3Q8N146 312 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 HSD17B8Q92506 261 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 PRSS27Q9BQR3 290 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 ORAI3Q9BRQ5 295 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 CACNG6Q9BXT2 260 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 PITHD1Q9GZP4 211 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 MED17Q9NVC6 651 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 BTN3A3O00478 584 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 PEX12O00623 359 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 ZNF888P0CJ79 500 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 LAMP2P13473 410 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 PEBP1P30086 187 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 DGCR2P98153 550 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 ACSM1Q08AH1 577 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 CRMP1Q14194 572 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 FGL2Q14314 439 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 IRF4Q15306 451 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 RD3Q7Z3Z2 195 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 NRROSQ86YC3 692 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 HDDC3Q8N4P3 179 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 GRHL3Q8TE85 626 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 TRIM43Q96BQ3 446 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 ORAI1Q96D31 301 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 HS6ST2Q96MM7 605 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 GSDMCQ9BYG8 508 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 TMEM74BQ9NUR3 256 aa8.6□□□□□ -1.03
LIMCH1-215ENST00000512632 MYO9BQ13459 2157 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 RFPL3O75679 317 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 TOXO94900 526 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 MT-ND5P03915 603 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 F8A1P23610 371 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 PTBP1P26599 531 aaKnown RBP eCLIP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 HTR2AP28223 471 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 PKLRP30613 574 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 ZSWIM7Q19AV6 140 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 GAB4Q2WGN9 574 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 ZC3H14Q6PJT7 736 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 SIAH3Q8IW03 269 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 ARL14Q8N4G2 192 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 TOMM5Q8N4H5 51 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 OR2L8Q8NGY9 312 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 TMEM239Q8WW34 195 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 GHSRQ92847 366 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 MOAP1Q96BY2 351 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 MS4A3Q96HJ5 214 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 SDF2Q99470 211 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 NDC1Q9BTX1 674 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 COQ3Q9NZJ6 369 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 CACNA1CQ13936 2221 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 CDHR4A6H8M9 788 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 DUXAA6NLW8 204 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 GNB5O14775 395 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 SCO1O75880 301 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 TCRBP04435 133 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 ATXN8OSP0DMR3 200 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 BTCP35070 178 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 MNX1P50219 401 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 FOXK2Q01167 660 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 SMUG1Q53HV7 270 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 SIGIRRQ6IA17 410 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 PSRC1Q6PGN9 363 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 GID4Q8IVV7 300 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 MAP6Q96JE9 813 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 ANKRD19PQ9H560 264 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 ZMIZ1Q9ULJ6 1067 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 CARNS1A5YM72 827 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 FAM86C2PA6NEL3 165 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 J3QRE1 110 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 IL9P15248 144 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 STOMP27105 288 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 C19orf57Q0VDD7 668 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 GALEQ14376 348 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 FGFBP1Q14512 234 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 OR1Q1Q15612 314 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 TP53I3Q53FA7 332 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 MRPL2Q5T653 305 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 PRAMEF8Q5VWM4 474 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 PRAMEF7Q5VXH5 474 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 SRFBP1Q8NEF9 429 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 OR5J2Q8NH18 312 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 GCDHQ92947 438 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 UBL7Q96S82 380 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 OR51J1Q9H342 316 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 DPAGT1Q9H3H5 408 aa8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 PHPT1Q9NRX4 125 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 WSB2Q9NYS7 404 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-215ENST00000512632 TRAPPC13A5PLN9 417 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 NPR2P20594 1047 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 BTG1P62324 171 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 FAM78AQ5JUQ0 283 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SSX6Q7RTT6 188 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 CCDC28AQ8IWP9 274 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 LRRC25Q8N386 305 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 RFLNBQ8N5W9 214 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SPPL3Q8TCT6 385 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 DPCDQ9BVM2 203 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 GHITMQ9H3K2 345 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 TMEM5Q9Y2B1 443 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 AK6Q9Y3D8 172 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms