RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 NAP1L6A6NFF2 107 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 ARPC1BO15143 372 aaKnown RBP15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 TMPRSS11DO60235 418 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 TAS2R43P59537 309 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 SEC61A1P61619 476 aaKnown RBP15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 GDPD4Q6W3E5 623 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 C17orf107Q6ZR85 190 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 ZNF689Q96CS4 500 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 WDR89Q96FK6 387 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 LMLNQ96KR4 655 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 AMDHD1Q96NU7 426 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 SLC6A17Q9H1V8 727 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 GMEB2Q9UKD1 530 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 PTP4A3O75365 173 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 CKBP12277 381 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 ZNF311Q5JNZ3 666 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 PRAMEF14Q5SWL7 426 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 PRAMEF13Q5VWM6 474 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 DMKNQ6E0U4 476 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 RNF180Q86T96 592 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 ZNF454Q8N9F8 522 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 OR10H4Q8NGA5 316 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 SP7Q8TDD2 431 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 PIGKQ92643 395 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 ELP4Q96EB1 424 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 MRPS24Q96EL2 167 aaKnown RBP15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 MED20Q9H944 212 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 COL4A3Q01955 1670 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 CASP8AP2Q9UKL3 1982 aa15.9■□□□□ 0.14
SQSTM1-211ENST00000506690 HMSDA8MTL9 139 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 D6RAR5 112 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 CDC42EP2O14613 210 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 PIP5K1CO60331 668 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 THY1P04216 161 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 GALTP07902 379 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ACVR1BP36896 505 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ERVFC1P60507 584 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 PSMA6P60900 246 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 STXBP1P61764 594 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 DEFB115Q30KQ5 88 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 SLC25A25Q6KCM7 469 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 MBOAT2Q6ZWT7 520 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 TMUB2Q71RG4 321 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 IZUMO1Q8IYV9 350 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 AUTS2Q8WXX7 1259 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ST8SIA2Q92186 375 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 CAPNS2Q96L46 248 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 YIPF4Q9BSR8 244 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 FN3KQ9H479 309 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 TAS2R5Q9NYW4 299 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 PCDHGA9Q9Y5G4 932 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 PRR23D1E9PI22 279 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 TEX46H3BTG2 121 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ZNF749O43361 778 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ECDO95905 644 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 HIST1H2ABP04908 130 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ZGLP1P0C6A0 271 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 PRR23D2P0DMB1 279 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 PPP3CBP16298 524 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 CST5P28325 142 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 NRG3P56975 720 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 PRAMEF8Q5VWM4 474 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 PRAMEF7Q5VXH5 474 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ZNF626Q68DY1 528 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 RPTNQ6XPR3 784 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 HIST3H2AQ7L7L0 130 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 SYT9Q86SS6 491 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 CFAP206Q8IYR0 622 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 MEIOBQ8N635 442 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 OR13C5Q8NGS8 318 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 HIST1H2ACQ93077 130 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 CMTM3Q96MX0 182 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 HCAR1Q9BXC0 346 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ZCCHC2Q9C0B9 1178 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 POLMQ9NP87 494 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 HPF1Q9NWY4 346 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 AKAP7Q9P0M2 348 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 NTMQ9P121 344 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ZNF69Q9UC07 566 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ZMAT5Q9UDW3 170 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 YIPF1Q9Y548 306 aa15.89■□□□□ 0.13
SQSTM1-211ENST00000506690 ZNF98A6NK75 572 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 MPTX1A8MV57 137 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 STX11O75558 287 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 GATBO75879 557 aaKnown RBP15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 OLFM2O95897 454 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 MAZP56270 477 aaKnown RBP15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 UBE2NLQ5JXB2 153 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 C6orf132Q5T0Z8 1188 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 PRPF38BQ5VTL8 546 aaKnown RBP15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 ZC3H14Q6PJT7 736 aaKnown RBP15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 LCTLQ6UWM7 567 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 VRK2Q86Y07 508 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 PDZD9Q8IXQ8 264 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 CD99L2Q8TCZ2 262 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 THEM6Q8WUY1 208 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 GHSRQ92847 366 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 ZG16BQ96DA0 208 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 C4orf36Q96KX1 117 aa15.88■□□□□ 0.13
SQSTM1-211ENST00000506690 UTP23Q9BRU9 249 aaKnown RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms