RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TDRPQ86YL5 185 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 C4orf33Q8N1A6 199 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 ZNF619Q8N2I2 560 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 OR7A2PQ8NGA2 310 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 TWIST2Q8WVJ9 160 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 NEUROG1Q92886 237 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 FBXW5Q969U6 566 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 ZNF524Q96C55 264 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 CHMP6Q96FZ7 201 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 REXO5Q96IC2 774 aaKnown RBP11.02□□□□□ -0.65
CPSF3-204ENST00000489403 RHOXF2Q9BQY4 288 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 HDHD5Q9BXW7 423 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 TIGARQ9NQ88 270 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 GIMAP2Q9UG22 337 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 ATP6V1HQ9UI12 483 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 ICAM5Q9UMF0 924 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 CARD8Q9Y2G2 431 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 MAGED1Q9Y5V3 778 aaPredicted RBP11.02□□□□□ -0.65
CPSF3-204ENST00000489403 ACTL7BQ9Y614 415 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 CR1P17927 2039 aa11.02□□□□□ -0.65
CPSF3-204ENST00000489403 CSPG4Q6UVK1 2322 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 SMIM23A6NLE4 172 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 GJE1A6NN92 205 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 TMEM233B4DJY2 109 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 RNF223E7ERA6 249 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 KIF2AO00139 706 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 PIP5K1BO14986 540 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 SCAMP2O15127 329 aaKnown RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 CRLF1O75462 422 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 NUDT14O95848 222 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 CHEK2O96017 543 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ADAP00813 363 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 CHRNGP07510 517 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 CD3EP07766 207 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 PRKCAP17252 672 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 KRT4P19013 534 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ATP6V1C1P21283 382 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 HPCAL1P37235 193 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 CDKN1AP38936 164 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 SUMO3P55854 103 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 NDUFAF6Q330K2 333 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 UGT3A2Q3SY77 523 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 TMEM176BQ3YBM2 270 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ZNF672Q499Z4 452 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 DCST2Q5T1A1 773 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 DDIASQ8IXT1 998 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 BANPQ8N9N5 519 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ZNF527Q8NB42 609 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ATP6V1C2Q8NEY4 427 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 EPS8L3Q8TE67 593 aaKnown RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ZFP90Q8TF47 636 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 KISS1RQ969F8 398 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 TRMT61AQ96FX7 289 aaKnown RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 PSD2Q9BQI7 771 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 TRMOQ9BU70 441 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ESRP2Q9H6T0 727 aaKnown RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 CXorf36Q9H7Y0 433 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ANKZF1Q9H8Y5 726 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 GP6Q9HCN6 339 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 MID2Q9UJV3 735 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 ING1Q9UK53 422 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 SNX8Q9Y5X2 465 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 GPC6Q9Y625 555 aaPredicted RBP11.01□□□□□ -0.65
CPSF3-204ENST00000489403 KCNE3Q9Y6H6 103 aa11.01□□□□□ -0.65
CPSF3-204ENST00000489403 IGHV3-15A0A0B4J1V0 119 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 ZNF814B7Z6K7 855 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 TRIM13O60858 407 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 PRKD3O94806 890 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 YES1P07947 543 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 LAMP1P11279 417 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 DDX5P17844 614 aaKnown RBP11□□□□□ -0.65
CPSF3-204ENST00000489403 ENPP1P22413 925 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 DMTNQ08495 405 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 SELENBP1Q13228 472 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 ITGADQ13349 1161 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 TP53BP2Q13625 1128 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 ETFDHQ16134 617 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 KBTBD8Q8NFY9 601 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 PSMA8Q8TAA3 256 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 GPR119Q8TDV5 335 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 ADAMTS15Q8TE58 950 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 SMAP2Q8WU79 429 aaPredicted RBP11□□□□□ -0.65
CPSF3-204ENST00000489403 UBLCP1Q8WVY7 318 aaPredicted RBP11□□□□□ -0.65
CPSF3-204ENST00000489403 HSD17B8Q92506 261 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 MS4A3Q96HJ5 214 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 ACTRT3Q9BYD9 372 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 POTEKPQ9BYX7 375 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 HOXD1Q9GZZ0 328 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 BCO1Q9HAY6 547 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 GPATCH2Q9NW75 528 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 LIPT1Q9Y234 373 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 FBN1P35555 2871 aaKnown RBP11□□□□□ -0.65
CPSF3-204ENST00000489403 JMJD1CQ15652 2540 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 TLN2Q9Y4G6 2542 aa11□□□□□ -0.65
CPSF3-204ENST00000489403 A0A1W2PNR3 127 aa10.99□□□□□ -0.65
CPSF3-204ENST00000489403 A0A1W2PP18 115 aa10.99□□□□□ -0.65
CPSF3-204ENST00000489403 DPRXA6NFQ7 191 aa10.99□□□□□ -0.65
CPSF3-204ENST00000489403 ESPNB1AK53 854 aa10.99□□□□□ -0.65
CPSF3-204ENST00000489403 TMEM114B3SHH9 223 aa10.99□□□□□ -0.65
CPSF3-204ENST00000489403 NPIPB9F8W1W9 429 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms