RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 GGTLC2Q14390 218 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 TIGITQ495A1 244 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 FAM74A3Q4VXF1 159 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 OR52W1Q6IF63 320 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 WDR74Q6RFH5 385 aaPredicted RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 TMEM184AQ6ZMB5 413 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 WDR88Q6ZMY6 472 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 RFLNAQ6ZTI6 216 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 LANCL3Q6ZV70 420 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 ARMCX2Q7L311 632 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 ABHD12BQ7Z5M8 362 aaPredicted RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 CCDC91Q7Z6B0 441 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 VRK2Q86Y07 508 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 SAXO1Q8IYX7 474 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 KIR2DL5AQ8N109 375 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 OR51G1Q8NGK1 321 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 ZNF596Q8TC21 504 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 URGCPQ8TCY9 931 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 ATP6V1E2Q96A05 226 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 EEF2KMTQ96G04 330 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 CELF6Q96J87 481 aaKnown RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 CABS1Q96KC9 395 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 WRAP53Q9BUR4 548 aaKnown RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 C6orf203Q9P0P8 240 aaPredicted RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 MTRF1LQ9UGC7 380 aaKnown RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 DCDC2Q9UHG0 476 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 APPL1Q9UKG1 709 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 TBX21Q9UL17 535 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 EIF3LQ9Y262 564 aaKnown RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 PCM1Q15154 2024 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 NKX2-6A6NCS4 301 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 WASHC1A8K0Z3 465 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 WASH3PC4AMC7 463 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 C11orf94C9JXX5 98 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 H3BMQ9 156 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 PES1O00541 588 aaKnown RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 STX11O75558 287 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 SLC4A1P02730 911 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 ANXA4P09525 319 aaPredicted RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 GCFC2P16383 781 aaKnown RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 TBPP20226 339 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 ATP5A1P25705 553 aaKnown RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 OTX2P32243 289 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 BDKRB1P46663 353 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 NUMBP49757 651 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 MNAT1P51948 309 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 ZNF136P52737 540 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 EXOSC2Q13868 293 aaKnown RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 CHI3L2Q15782 390 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 FAM199XQ6PEV8 388 aaPredicted RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 WASH2PQ6VEQ5 465 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 LPCAT2Q7L5N7 544 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 ZNF695Q8IW36 515 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 CNIH3Q8TBE1 160 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 PAQR8Q8TEZ7 354 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 DNAJA4Q8WW22 397 aaPredicted RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 PIGCQ92535 297 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 MS4A14Q96JA4 679 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 OR2M2Q96R28 347 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 RASL11BQ9BPW5 248 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 POLR2J2Q9GZM3 115 aaKnown RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 POLR2J3Q9H1A7 115 aaKnown RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 B3GNT2Q9NY97 397 aa1.68□□□□□ -2.14
VPS50-216ENST00000484954 CNOT2Q9NZN8 540 aaKnown RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 STRAPQ9Y3F4 350 aaKnown RBP1.68□□□□□ -2.14
VPS50-216ENST00000484954 A0A1B0GWB2 263 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 NBR2O15453 112 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 SNAPINO95295 136 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 OLFM2O95897 454 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 SERPINA2P20848 420 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 COX7A1P24310 79 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 PRDX3P30048 256 aaKnown RBP1.67□□□□□ -2.14
VPS50-216ENST00000484954 COPB2P35606 906 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 CSNK1DP48730 415 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 RGS1Q08116 209 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 SNX1Q13596 522 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 TOR1AIP1Q5JTV8 583 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 CASC10Q5T4H9 136 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 SCYL2Q6P3W7 929 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 COX15Q7KZN9 410 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 BATF2Q8N1L9 274 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 STKLD1Q8NE28 680 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 IL1F10Q8WWZ1 152 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 CITED1Q99966 193 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 KLHDC3Q9BQ90 382 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 RPAP3Q9H6T3 665 aaPredicted RBP1.67□□□□□ -2.14
VPS50-216ENST00000484954 AIG1Q9NVV5 245 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 WRAP73Q9P2S5 460 aaPredicted RBP1.67□□□□□ -2.14
VPS50-216ENST00000484954 KCNN3Q9UGI6 736 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 BTNL2Q9UIR0 455 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 CRLS1Q9UJA2 301 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 NUDCQ9Y266 331 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 PLLPQ9Y342 182 aa1.67□□□□□ -2.14
VPS50-216ENST00000484954 RPGRIP1LQ68CZ1 1315 aa1.66□□□□□ -2.14
VPS50-216ENST00000484954 MAP3K15Q6ZN16 1313 aa1.66□□□□□ -2.14
VPS50-216ENST00000484954 PP2D1A8MPX8 630 aa1.66□□□□□ -2.14
VPS50-216ENST00000484954 TNFSF13O75888 250 aa1.66□□□□□ -2.14
VPS50-216ENST00000484954 SLC25A27O95847 323 aa1.66□□□□□ -2.14
VPS50-216ENST00000484954 PCCBP05166 539 aa1.66□□□□□ -2.14
VPS50-216ENST00000484954 RETP07949 1114 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms