RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 TIMMDC1Q9NPL8 285 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 SACM1LQ9NTJ5 587 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 RLIMQ9NVW2 624 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 KLRF1Q9NZS2 232 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 RPS6KB2Q9UBS0 482 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 A4GNTQ9UNA3 340 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 SAMHD1Q9Y3Z3 626 aaKnown RBP9.3□□□□□ -0.92
USP39-215ENST00000481409 WIF1Q9Y5W5 379 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 LYVE1Q9Y5Y7 322 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 CPAMD8Q8IZJ3 1885 aa9.3□□□□□ -0.92
USP39-215ENST00000481409 A0A087WZY1 265 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 CENPVL1A0A0U1RR11 272 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 ANKUB1A6NFN9 424 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 ARGFXA6NJG6 315 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 CLDN24A6NM45 220 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 HCRTR2O43614 444 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 CHP2O43745 196 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 CDC40O60508 579 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP39-215ENST00000481409 ZNF354AO60765 605 aaPredicted RBP9.29□□□□□ -0.92
USP39-215ENST00000481409 CYP7B1O75881 506 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 UBTFL6P0CB48 400 aaPredicted RBP9.29□□□□□ -0.92
USP39-215ENST00000481409 PNMTP11086 282 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 ZNF23P17027 643 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 SPINK2P20155 84 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 OR1Q1Q15612 314 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 CD226Q15762 336 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 NPTX1Q15818 432 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 MICAQ29983 383 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 DCST1Q5T197 706 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 C5orf46Q6UWT4 87 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 APOOLQ6UXV4 268 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 C16orf47Q6ZP98 133 aaPredicted RBP9.29□□□□□ -0.92
USP39-215ENST00000481409 ZBTB49Q6ZSB9 765 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 AMIGO2Q86SJ2 522 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 MARCH3Q86UD3 253 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 PACS2Q86VP3 889 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 BEST3Q8N1M1 668 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 SIRT6Q8N6T7 355 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 OR10G3Q8NGC4 313 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 OR4D11Q8NGI4 311 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 OR4C15Q8NGM1 316 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 ADAMTS16Q8TE57 1224 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 ST8SIA1Q92185 356 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 SLC19A3Q9BZV2 496 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 NTN4Q9HB63 628 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 ACER3Q9NUN7 267 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 USE1Q9NZ43 259 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 PPP4R1LQ9P1A2 415 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 ICAM5Q9UMF0 924 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 MRPS18CQ9Y3D5 142 aaKnown RBP9.29□□□□□ -0.92
USP39-215ENST00000481409 PCDHGA9Q9Y5G4 932 aaKnown RBP9.29□□□□□ -0.92
USP39-215ENST00000481409 PCSK5Q92824 1860 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 PIEZO1Q92508 2521 aa9.29□□□□□ -0.92
USP39-215ENST00000481409 NINQ8N4C6 2090 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 A0A0B4J2E0 115 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 A0A1B0GX12 115 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 OR5H15A6NDH6 313 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 FAM47E-STBD1D6RA91 191 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 K7ENP7 123 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 ETV2O00321 342 aaPredicted RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 FFAR1O14842 300 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 CBR3O75828 277 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 CCNB2O95067 398 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 RASAL1O95294 804 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 MT-ND1P03886 318 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 PRKAR1AP10644 381 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 CDH2P19022 906 aaPredicted RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 TNFRSF1BP20333 461 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 CNR1P21554 472 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 ADH6P28332 368 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 PTGDSP41222 190 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 EIF1P41567 113 aaKnown RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 SLC1A3P43003 542 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 ALDH3A2P51648 485 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 CDH12P55289 794 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 SESN3P58005 492 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 ZNF117Q03924 483 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 COX10Q12887 443 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 PIN1Q13526 163 aaPredicted RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 TUBA3CQ13748 450 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 GLYR1Q49A26 553 aaPredicted RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 TUBA3EQ6PEY2 450 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 INO80CQ6PI98 192 aaPredicted RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 RRM2BQ7LG56 351 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 COMTD1Q86VU5 262 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 LACC1Q8IV20 430 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 SPACA3Q8IXA5 215 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 ICA1LQ8NDH6 482 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 PSD4Q8NDX1 1056 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 GIPC3Q8TF64 312 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 DUSP19Q8WTR2 217 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 SNRNP27Q8WVK2 155 aaKnown RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 ACOT11Q8WXI4 607 aaPredicted RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 SLC41A3Q96GZ6 507 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 ALPK1Q96QP1 1244 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 SMAD5Q99717 465 aaKnown RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 SEMA6AQ9H2E6 1030 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 ZNF552Q9H707 407 aaPredicted RBP9.28□□□□□ -0.92
USP39-215ENST00000481409 GPR83Q9NYM4 423 aa9.28□□□□□ -0.92
USP39-215ENST00000481409 FLRT3Q9NZU0 649 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms