RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 L3MBTL1Q9Y468 752 aa14.05□□□□□ -0.16
HMGA1-206ENST00000478214 PCDHB14Q9Y5E9 798 aa14.05□□□□□ -0.16
HMGA1-206ENST00000478214 AP4B1Q9Y6B7 739 aa14.05□□□□□ -0.16
HMGA1-206ENST00000478214 ITPR2Q14571 2701 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 BCAS1O75363 584 aaPredicted RBP14.04□□□□□ -0.16
HMGA1-206ENST00000478214 CSTAP01040 98 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 OPN1LWP04000 364 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 NR2F1P10589 423 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 HOXB9P17482 250 aaPredicted RBP14.04□□□□□ -0.16
HMGA1-206ENST00000478214 CRATP43155 626 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 CCR4P51679 360 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 SUMO3P55854 103 aaPredicted RBP14.04□□□□□ -0.16
HMGA1-206ENST00000478214 IRX1P78414 480 aaPredicted RBP14.04□□□□□ -0.16
HMGA1-206ENST00000478214 SF3A3Q12874 501 aaKnown RBP eCLIP14.04□□□□□ -0.16
HMGA1-206ENST00000478214 FOXF1Q12946 379 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 FOXF2Q12947 444 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 SKP2Q13309 424 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 FGFBP1Q14512 234 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 MAPK11Q15759 364 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 PAGE3Q5JUK9 113 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 LRRC74BQ6ZQY2 392 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 EIF3MQ7L2H7 374 aaKnown RBP14.04□□□□□ -0.16
HMGA1-206ENST00000478214 CHMP1BQ7LBR1 199 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 GGNQ86UU5 652 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 GRAMD2AQ8IUY3 354 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 MSRB3Q8IXL7 192 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 ACBD4Q8NC06 268 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 OR5W2Q8NH69 310 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 FIG4Q92562 907 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 ZNF845Q96IR2 970 aaPredicted RBP14.04□□□□□ -0.16
HMGA1-206ENST00000478214 LAT2Q9GZY6 243 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 ENKD1Q9H0I2 346 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 ZNF385DQ9H6B1 395 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 RUBCNLQ9H714 662 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 TMEM185BQ9H7F4 350 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 FGFR1OP2Q9NVK5 253 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 TMEM45AQ9NWC5 275 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 SLAMF8Q9P0V8 285 aa14.04□□□□□ -0.16
HMGA1-206ENST00000478214 ZNF629Q9UEG4 869 aaPredicted RBP14.04□□□□□ -0.16
HMGA1-206ENST00000478214 A0A096LPI6 279 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 CLDN24A6NM45 220 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 EIF1AYO14602 144 aaKnown RBP14.03□□□□□ -0.16
HMGA1-206ENST00000478214 DVL2O14641 736 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 RCBTB2O95199 551 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 VIMP08670 466 aaKnown RBP14.03□□□□□ -0.16
HMGA1-206ENST00000478214 UBTFL6P0CB48 400 aaPredicted RBP14.03□□□□□ -0.16
HMGA1-206ENST00000478214 TMIGD3P0DMS9 266 aaPredicted RBP14.03□□□□□ -0.16
HMGA1-206ENST00000478214 PRF1P14222 555 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 IL11P20809 199 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 CTSSP25774 331 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 MAGEA8P43361 318 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 EEFSECP57772 596 aaKnown RBP14.03□□□□□ -0.16
HMGA1-206ENST00000478214 RAC1P63000 192 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 CGB2Q6NT52 195 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 MEX3BQ6ZN04 569 aaKnown RBP14.03□□□□□ -0.16
HMGA1-206ENST00000478214 GCNT2Q8N0V5 402 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 TOR1AIP2Q8NFQ8 470 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 FBXO27Q8NI29 283 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 INTS12Q96CB8 462 aaKnown RBP14.03□□□□□ -0.16
HMGA1-206ENST00000478214 TM9SF2Q99805 663 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 SPOCK3Q9BQ16 436 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 THUMPD3Q9BV44 507 aaKnown RBP14.03□□□□□ -0.16
HMGA1-206ENST00000478214 TMEM120AQ9BXJ8 343 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 PINK1Q9BXM7 581 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 RABEP2Q9H5N1 569 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 SLC25A37Q9NYZ2 338 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 TRIM33Q9UPN9 1127 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 ARHGAP21Q5T5U3 1957 aa14.03□□□□□ -0.16
HMGA1-206ENST00000478214 SLC22A20A6NK97 555 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 CLIC1O00299 241 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 ATP8B1O43520 1251 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 EFNA2O43921 213 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 TROVE2P10155 538 aaKnown RBP eCLIP14.02□□□□□ -0.17
HMGA1-206ENST00000478214 PRKCAP17252 672 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 IGFBP2P18065 325 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 ME2P23368 584 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 SHC1P29353 583 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 PGM1P36871 562 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 EIF1P41567 113 aaKnown RBP14.02□□□□□ -0.17
HMGA1-206ENST00000478214 DSTNP60981 165 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 RPS3AP61247 264 aaKnown RBP14.02□□□□□ -0.17
HMGA1-206ENST00000478214 PLAURQ03405 335 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 CBFBQ13951 182 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 QPRTQ15274 297 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 LRIF1Q5T3J3 769 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 P4HA3Q7Z4N8 544 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 MCEMP1Q8IX19 187 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 METTL25Q8N6Q8 603 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 FAM71CQ8NEG0 241 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 FNDC9Q8TBE3 224 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 OIT3Q8WWZ8 545 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 ADGRG7Q96K78 797 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 TREX2Q9BQ50 279 aaPredicted RBP14.02□□□□□ -0.17
HMGA1-206ENST00000478214 MTHFD2LQ9H903 347 aaPredicted RBP14.02□□□□□ -0.17
HMGA1-206ENST00000478214 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.02□□□□□ -0.17
HMGA1-206ENST00000478214 STOML1Q9UBI4 398 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 P2RX2Q9UBL9 471 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 SLC35A3Q9Y2D2 325 aa14.02□□□□□ -0.17
HMGA1-206ENST00000478214 GPC6Q9Y625 555 aaPredicted RBP14.02□□□□□ -0.17
HMGA1-206ENST00000478214 INTS1Q8N201 2190 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms