RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 RTL3Q8N8U3 475 aaKnown RBP3.93□□□□□ -1.78
VPS50-214ENST00000477935 NPEPL1Q8NDH3 523 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 OR4C3Q8NH37 302 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 SNX21Q969T3 373 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS50-214ENST00000477935 TBC1D31Q96DN5 1066 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 POM121L2Q96KW2 1035 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 LINC00479Q96M42 142 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 NUDT16L1Q9BRJ7 211 aaKnown RBP3.93□□□□□ -1.78
VPS50-214ENST00000477935 RIOK2Q9BVS4 552 aaKnown RBP3.93□□□□□ -1.78
VPS50-214ENST00000477935 NUP85Q9BW27 656 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 MRPL1Q9BYD6 325 aaKnown RBP3.93□□□□□ -1.78
VPS50-214ENST00000477935 PLCXD1Q9NUJ7 323 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 B3GAT1Q9P2W7 334 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 ATXN10Q9UBB4 475 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 B4GALT7Q9UBV7 327 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 NOCTQ9UK39 431 aaKnown RBP3.93□□□□□ -1.78
VPS50-214ENST00000477935 PCYT1BQ9Y5K3 369 aaPredicted RBP3.93□□□□□ -1.78
VPS50-214ENST00000477935 MAGED1Q9Y5V3 778 aaPredicted RBP3.93□□□□□ -1.78
VPS50-214ENST00000477935 HCFC1P51610 2035 aa3.93□□□□□ -1.78
VPS50-214ENST00000477935 SPTBP11277 2137 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 ANKRD12Q6UB98 2062 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 A0A1W2PQ72 361 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 OR6C74A6NCV1 312 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 TUBAL3A6NHL2 446 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 GLOD5A6NK44 160 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 KLF11O14901 512 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CETN3O15182 167 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CD5LO43866 347 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 ALOX12BO75342 701 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 LETM1O95202 739 aaPredicted RBP3.92□□□□□ -1.78
VPS50-214ENST00000477935 SLC25A14O95258 325 aaPredicted RBP3.92□□□□□ -1.78
VPS50-214ENST00000477935 GPIP06744 558 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 ZNF24P17028 368 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CXCR2P25025 360 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 PRDX3P30048 256 aaKnown RBP3.92□□□□□ -1.78
VPS50-214ENST00000477935 RAD52P43351 418 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 SLC9A3P48764 834 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 KPNA2P52292 529 aaKnown RBP3.92□□□□□ -1.78
VPS50-214ENST00000477935 KRTAP10-12P60413 245 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CBWD6Q4V339 395 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 PHLDA2Q53GA4 152 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 TFDP3Q5H9I0 405 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CBWD3Q5JTY5 395 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 GPRC6AQ5T6X5 926 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 ARMC12Q5T9G4 340 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 C1orf189Q5VU69 101 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 PDPK2PQ6A1A2 396 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 C12orf54Q6X4T0 127 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 FAM183BPQ6ZVS7 135 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CENPQQ7L2Z9 268 aaPredicted RBP3.92□□□□□ -1.78
VPS50-214ENST00000477935 BNIPLQ7Z465 357 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 MYPOPQ86VE0 399 aaPredicted RBP3.92□□□□□ -1.78
VPS50-214ENST00000477935 FAM131BQ86XD5 332 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 SLC13A5Q86YT5 568 aaPredicted RBP3.92□□□□□ -1.78
VPS50-214ENST00000477935 ZNF595Q8IYB9 648 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 POGLUT1Q8NBL1 392 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 MAPK1IP1LQ8NDC0 245 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 OR10S1Q8NGN2 331 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 OR10Q1Q8NGQ4 319 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 OR2T6Q8NHC8 308 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CCDC107Q8WV48 283 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 DHX58Q96C10 678 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 TMCO6Q96DC7 493 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 PSKH2Q96QS6 385 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CPXM1Q96SM3 734 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 BEX2Q9BXY8 128 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 PITPNM3Q9BZ71 974 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 KLHL4Q9C0H6 718 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 PDFQ9HBH1 243 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 ZNF160Q9HCG1 818 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 EQTNQ9NQ60 294 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.92□□□□□ -1.78
VPS50-214ENST00000477935 SERINC1Q9NRX5 453 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 FAM207AQ9NSI2 230 aaPredicted RBP3.92□□□□□ -1.78
VPS50-214ENST00000477935 EXOC1Q9NV70 894 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 SLC23A2Q9UGH3 650 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 CD84Q9UIB8 345 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 DAPK2Q9UIK4 370 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 POMT2Q9UKY4 750 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 COLEC10Q9Y6Z7 277 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 RYR3Q15413 4870 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 ABCA1O95477 2261 aa3.92□□□□□ -1.78
VPS50-214ENST00000477935 A0A1B0GTH9 108 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 GTPBP10A4D1E9 387 aaKnown RBP3.91□□□□□ -1.78
VPS50-214ENST00000477935 ARHGAP42A6NI28 874 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 VSTM2BA6NLU5 285 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 H3BMH7 237 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 RASGRF2O14827 1237 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 P4HA2O15460 535 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 PGLSO95336 258 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 F10P00742 488 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 KRT5P13647 590 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 RGRP47804 291 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 STC1P52823 247 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 NUP107P57740 925 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 KRTAP10-5P60370 271 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 ZNF33BQ06732 778 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 FBXL19-AS1Q494R0 122 aa3.91□□□□□ -1.78
VPS50-214ENST00000477935 ELFN2Q5R3F8 820 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms