RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	GIN1	Q9NXP7	522 aa		13.65	□□□□□ -0.22
VARS-223	ENST00000474643	FLRT3	Q9NZU0	649 aa		13.65	□□□□□ -0.22
VARS-223	ENST00000474643	C17orf51	A8MQB3	221 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	NR5A2	O00482	541 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	SCD	O00767	359 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	NDUFB5	O43674	189 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	FADS1	O60427	444 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	SCN2B	O60939	215 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ANGPTL1	O95841	491 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	AGR2	O95994	175 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	CRH	P06850	196 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	FCGR2A	P12318	317 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ME2	P23368	584 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ADSL	P30566	484 aa	Predicted RBP	13.64	□□□□□ -0.23
VARS-223	ENST00000474643	KHK	P50053	298 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ANXA11	P50995	505 aa	Known RBP	13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF41	P51814	821 aa	Predicted RBP	13.64	□□□□□ -0.23
VARS-223	ENST00000474643	GAS1	P54826	345 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	SF3A3	Q12874	501 aa	Known RBP eCLIP	13.64	□□□□□ -0.23	2e-6	■■■■■ 32.7
VARS-223	ENST00000474643	FGFBP1	Q14512	234 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
VARS-223	ENST00000474643	C6orf10	Q5SRN2	563 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF614	Q8N883	585 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	FADS6	Q8N9I5	356 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	C1GALT1C1	Q96EU7	318 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF845	Q96IR2	970 aa	Predicted RBP	13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ITCH	Q96J02	903 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	SLC39A3	Q9BRY0	314 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	INPP5K	Q9BT40	448 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	MED18	Q9BUE0	208 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	TMEM120A	Q9BXJ8	343 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	RABEP2	Q9H5N1	569 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF226	Q9NYT6	803 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	JKAMP	Q9P055	326 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	CCDC167	Q9P0B6	97 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	VDAC3	Q9Y277	283 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	C2CD3	Q4AC94	2353 aa		13.64	□□□□□ -0.23
VARS-223	ENST00000474643	KIAA1549	Q9HCM3	1950 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	DOCK7	Q96N67	2140 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	OR2M5	A3KFT3	312 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	EIF1AY	O14602	144 aa	Known RBP	13.63	□□□□□ -0.23
VARS-223	ENST00000474643	MSTN	O14793	375 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	SLC22A2	O15244	555 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	TGM6	O95932	706 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	AK1	P00568	194 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	LCN1	P31025	176 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	CDKN2C	P42773	168 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	EIF1AX	P47813	144 aa	Known RBP	13.63	□□□□□ -0.23
VARS-223	ENST00000474643	HPCA	P84074	193 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	SQLE	Q14534	574 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	AGK	Q53H12	422 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	GKAP1	Q5VSY0	366 aa	Predicted RBP	13.63	□□□□□ -0.23
VARS-223	ENST00000474643	MSANTD1	Q6ZTZ1	278 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	ADGRE4P	Q86SQ3	457 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	GATS	Q8NAP1	163 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF527	Q8NB42	609 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	C10orf82	Q8WW14	230 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	XAGE5	Q8WWM1	108 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	VPS33A	Q96AX1	596 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	ALPK1	Q96QP1	1244 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	UBQLN4	Q9NRR5	601 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	FBXO34	Q9NWN3	711 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF337	Q9Y3M9	751 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	AP4B1	Q9Y6B7	739 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	KCNE3	Q9Y6H6	103 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643	PCNX3	Q9H6A9	2034 aa		13.63	□□□□□ -0.23
VARS-223	ENST00000474643		A8MXE2	369 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	HCRTR2	O43614	444 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	CCDC22	O60826	627 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	SYNGR4	O95473	234 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	KRT75	O95678	551 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	OXSR1	O95747	527 aa	Predicted RBP	13.62	□□□□□ -0.23
VARS-223	ENST00000474643	OR12D1	P0DN82	309 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	POU2F1	P14859	743 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	KLK2	P20151	261 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	CTBP2	P56545	445 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	B3GALT5-AS1	P59052	145 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	PON3	Q15166	354 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	SAXO2	Q658L1	398 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	ZAR1	Q86SH2	424 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	RNF130	Q86XS8	419 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	TGIF2LY	Q8IUE0	185 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	OR4C3	Q8NH37	302 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	FAM110B	Q8TC76	370 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	PNPT1	Q8TCS8	783 aa	Known RBP	13.62	□□□□□ -0.23
VARS-223	ENST00000474643	RNF138	Q8WVD3	245 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	RAB8B	Q92930	207 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	NEURL3	Q96EH8	262 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	SH3YL1	Q96HL8	342 aa	Predicted RBP	13.62	□□□□□ -0.23
VARS-223	ENST00000474643	ELAC2	Q9BQ52	826 aa	Known RBP	13.62	□□□□□ -0.23
VARS-223	ENST00000474643	HOXD1	Q9GZZ0	328 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	FANCF	Q9NPI8	374 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	PROCR	Q9UNN8	238 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	EMC9	Q9Y3B6	208 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF175	Q9Y473	711 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643	MED12	Q93074	2177 aa		13.62	□□□□□ -0.23
VARS-223	ENST00000474643		A0A087WZY1	265 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	NPIPA5	A0A0B4J1W7	369 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	FAM221A	A4D161	298 aa		13.61	□□□□□ -0.23

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