RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 VDAC3Q9Y277 283 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 NBASA2RRP1 2371 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 LINC01387J3KSC0 135 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 DNAJA2O60884 412 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 NUDT14O95848 222 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 LINGO3P0C6S8 592 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 PABPC4LP0CB38 370 aaKnown RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 CHMP24386 653 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 AQP1P29972 269 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 PCGF2P35227 344 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 CA7P43166 264 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 CCR4P51679 360 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF41P51814 821 aaPredicted RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 PCBP3P57721 371 aaKnown RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 EEF1A1P68104 462 aaKnown RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 PLAURQ03405 335 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 CBFBQ13951 182 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ZSWIM7Q19AV6 140 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 VMACQ2NL98 169 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 TMEM44Q2T9K0 475 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 PLPPR5Q32ZL2 321 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 EMC4Q5J8M3 183 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF311Q5JNZ3 666 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 MRPL2Q5T653 305 aaKnown RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 WLSQ5T9L3 541 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 C1QL3Q5VWW1 255 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ERICH5Q6P6B1 374 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF836Q6ZNA1 936 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 CD163Q86VB7 1156 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 KRT73Q86Y46 540 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 SLC30A8Q8IWU4 369 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 CLIP4Q8N3C7 705 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 OR5M9Q8NGP3 310 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 OR5M1Q8NGP8 315 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 CNOT9Q92600 299 aaKnown RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ZBTB8AQ96BR9 441 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 REXO5Q96IC2 774 aaKnown RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF607Q96SK3 696 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 SPATA5L1Q9BVQ7 753 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ARMC7Q9H6L4 198 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 DNAJB12Q9NXW2 375 aaKnown RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 TINAGQ9UJW2 476 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF443Q9Y2A4 671 aaPredicted RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 CHST2Q9Y4C5 530 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 GPC6Q9Y625 555 aaPredicted RBP10.82□□□□□ -0.68
VPS13D-204ENST00000469054 POLEQ07864 2286 aa10.82□□□□□ -0.68
VPS13D-204ENST00000469054 SVILO95425 2214 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 A0A1B0GUH1 482 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 OR2M5A3KFT3 312 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 C7orf72A4D263 438 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 CDHR4A6H8M9 788 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 CCT8L1PA6NM43 557 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 FIGNL2A6NMB9 653 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 FAM220BPB1ANY3 271 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 SHISA8B8ZZ34 492 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 LRRTM2O43300 516 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 SERPINB7O75635 380 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF17P17021 662 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 PGCP20142 388 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 ADH6P28332 368 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 PRKAR1BP31321 381 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 RYKP34925 604 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 EIF1P41567 113 aaKnown RBP10.81□□□□□ -0.68
VPS13D-204ENST00000469054 STARP49675 285 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 LHX2P50458 406 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 SLC7A2P52569 658 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 PSME3P61289 254 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 QPRTQ15274 297 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 TOMM34Q15785 309 aaPredicted RBP10.81□□□□□ -0.68
VPS13D-204ENST00000469054 C4orf17Q53FE4 359 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 DCST1Q5T197 706 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 INTS11Q5TA45 600 aaKnown RBP10.81□□□□□ -0.68
VPS13D-204ENST00000469054 RNF220Q5VTB9 566 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 ENPP6Q6UWR7 440 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 GRAMD2AQ8IUY3 354 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF440Q8IYI8 595 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 GTPBP8Q8N3Z3 284 aaPredicted RBP10.81□□□□□ -0.68
VPS13D-204ENST00000469054 OR2T12Q8NG77 320 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 POC1BQ8TC44 478 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 TMEM234Q8WY98 164 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 RELTQ969Z4 430 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF524Q96C55 264 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 WDYHV1Q96HA8 205 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 NSL1Q96IY1 281 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 PRDM14Q9GZV8 571 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 TP63Q9H3D4 680 aaPredicted RBP10.81□□□□□ -0.68
VPS13D-204ENST00000469054 PNPLA3Q9NST1 481 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 RLIMQ9NVW2 624 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 ALKBH4Q9NXW9 302 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 SH3BGRL2Q9UJC5 107 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF337Q9Y3M9 751 aa10.81□□□□□ -0.68
VPS13D-204ENST00000469054 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.8□□□□□ -0.68
VPS13D-204ENST00000469054 PRORSD1PA6NEY8 169 aa10.8□□□□□ -0.68
VPS13D-204ENST00000469054 CFAP73A6NFT4 308 aa10.8□□□□□ -0.68
VPS13D-204ENST00000469054 AHRRA9YTQ3 701 aa10.8□□□□□ -0.68
VPS13D-204ENST00000469054 M0QX08 132 aa10.8□□□□□ -0.68
VPS13D-204ENST00000469054 ETV2O00321 342 aaPredicted RBP10.8□□□□□ -0.68
VPS13D-204ENST00000469054 NME4O00746 187 aa10.8□□□□□ -0.68
VPS13D-204ENST00000469054 ADAM11O75078 769 aa10.8□□□□□ -0.68
VPS13D-204ENST00000469054 WDR1O75083 606 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms