RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 ZNF614Q8N883 585 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 RNF128Q8TEB7 428 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 ABHD3Q8WU67 409 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 CPNE4Q96A23 557 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-206ENST00000466532 TRIM44Q96DX7 344 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-206ENST00000466532 PLPPR2Q96GM1 343 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 PRPF18Q99633 342 aaKnown RBP17.09■□□□□ 0.33
COL9A3-206ENST00000466532 BDH2Q9BUT1 245 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 SRXN1Q9BYN0 137 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 GPATCH2Q9NW75 528 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 ZDHHC2Q9UIJ5 367 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 ICAM5Q9UMF0 924 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 KCNE3Q9Y6H6 103 aa17.09■□□□□ 0.33
COL9A3-206ENST00000466532 GTPBP1O00178 669 aaKnown RBP17.08■□□□□ 0.32
COL9A3-206ENST00000466532 ZNF195O14628 629 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 SMAD7O15105 426 aaKnown RBP17.08■□□□□ 0.32
COL9A3-206ENST00000466532 CFLARO15519 480 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 EFNA2O43921 213 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 PLAUP00749 431 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 NUDT17P0C025 328 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 PSMB1P20618 241 aaKnown RBP17.08■□□□□ 0.32
COL9A3-206ENST00000466532 ADH6P28332 368 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 ARRB2P32121 409 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 SERPINB5P36952 375 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 PTH2RP49190 550 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 ATP12AP54707 1039 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 SUMO3P55854 103 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-206ENST00000466532 IFFO1Q0D2I5 559 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.08■□□□□ 0.328e-6■■■■■ 27.9
COL9A3-206ENST00000466532 ATP6V1C2Q8NEY4 427 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 OR5AK3PQ8NH89 298 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 SFXN5Q8TD22 340 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 MOAP1Q96BY2 351 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 COQ8BQ96D53 544 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 ARSGQ96EG1 525 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 GSX2Q9BZM3 304 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 OR10A4Q9H209 315 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 ANKZF1Q9H8Y5 726 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 L2HGDHQ9H9P8 463 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 LGALS13Q9UHV8 139 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 ACTL7BQ9Y614 415 aa17.08■□□□□ 0.32
COL9A3-206ENST00000466532 GPC6Q9Y625 555 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-206ENST00000466532 TRIM64A6NGJ6 449 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 TRIM64BA6NI03 449 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 GJE1A6NN92 205 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 SOX30O94993 753 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 NID1P14543 1247 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 PRPS1L1P21108 318 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 RNPS1Q15287 305 aaKnown RBP17.07■□□□□ 0.32
COL9A3-206ENST00000466532 TOMM34Q15785 309 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-206ENST00000466532 NDUFAF6Q330K2 333 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 TMEM176BQ3YBM2 270 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-206ENST00000466532 TUSC5Q8IXB3 177 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 RFWD2Q8NHY2 731 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 GPR119Q8TDV5 335 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 TMEM171Q8WVE6 324 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 TUBGCP3Q96CW5 907 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 OR7D2Q96RA2 312 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 BHLHE41Q9C0J9 482 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-206ENST00000466532 KLHL13Q9P2N7 655 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 DTNAQ9Y4J8 743 aa17.07■□□□□ 0.32
COL9A3-206ENST00000466532 NPIPB9F8W1W9 429 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 PRKCAP17252 672 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 SOAT1P35610 550 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 ZNF844Q08AG5 666 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 ALKBH2Q6NS38 261 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 TFAP2EQ6VUC0 442 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 FCRLAQ7L513 359 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 NUFIP2Q7Z417 695 aaKnown RBP17.06■□□□□ 0.32
COL9A3-206ENST00000466532 RIMKLAQ8IXN7 391 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 TMCO5AQ8N6Q1 288 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 STEAP2Q8NFT2 490 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 OR5D16Q8NGK9 328 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 ZFP90Q8TF47 636 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 IGFBPL1Q8WX77 278 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 S100PBPQ96BU1 408 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 TMEM204Q9BSN7 226 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 DUSP26Q9BV47 211 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 COQ10BQ9H8M1 238 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 USF3Q68DE3 2245 aa17.06■□□□□ 0.32
COL9A3-206ENST00000466532 FN1P02751 2386 aaKnown RBP17.06■□□□□ 0.32
COL9A3-206ENST00000466532 HS3ST1O14792 307 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 ZNF264O43296 627 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 GCM2O75603 506 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-206ENST00000466532 PRKD3O94806 890 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 NTN1O95631 604 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 BPGMP07738 259 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 G6PDP11413 515 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 CREB1P16220 341 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 CCR4P51679 360 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 HBA1P69905 142 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 SELENBP1Q13228 472 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 TSC22D1Q15714 1073 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 PGS1Q32NB8 556 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 BHLHB9Q6PI77 547 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 GABRG1Q8N1C3 465 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 TOR1AIP2Q8NFQ8 470 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 MRGPRX4Q96LA9 322 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 SDF2Q99470 211 aa17.05■□□□□ 0.32
COL9A3-206ENST00000466532 TACO1Q9BSH4 297 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms