RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 JSRP1Q96MG2 331 aaPredicted RBP10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 SDF2Q99470 211 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 CCDC106Q9BWC9 280 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 RAD21L1Q9H4I0 556 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 FBXO34Q9NWN3 711 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 FLRT3Q9NZU0 649 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 SLAMF8Q9P0V8 285 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 WIF1Q9Y5W5 379 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 GMEB1Q9Y692 573 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 BBIP1A8MTZ0 92 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 FAM47E-STBD1D6RA91 191 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 HMGN4O00479 90 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 FBP2O00757 339 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 SNPHO15079 494 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 WIPF1O43516 503 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 GOSR1O95249 250 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 OXSR1O95747 527 aaPredicted RBP10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 FAM107AO95990 144 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 IFNA2P01563 188 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 NGFRP08138 427 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 ATP6V1C1P21283 382 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 TBXA2RP21731 343 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 PPIBP23284 216 aaKnown RBP10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 GDF1P27539 372 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 GAS1P54826 345 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 FUT5Q11128 374 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 FADDQ13158 208 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 COQ5Q5HYK3 327 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 DHDDSQ86SQ9 333 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 MTDHQ86UE4 582 aaKnown RBP10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 SNX32Q86XE0 403 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 OR4C3Q8NH37 302 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 CCT8L2Q96SF2 557 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 ZNF350Q9GZX5 532 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 MYLK2Q9H1R3 596 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 UBQLN4Q9NRR5 601 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 ARL2BPQ9Y2Y0 163 aa10.78□□□□□ -0.68
SQSTM1-206ENST00000466342 C2orf72A6NCS6 295 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 TUBAL3A6NHL2 446 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 AHRRA9YTQ3 701 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 ALG1L2C9J202 215 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 GNB5O14775 395 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 MRASO14807 208 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 SCO2O43819 266 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 SMPD2O60906 423 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 STX11O75558 287 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 HPNP05981 417 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 GUSBP08236 651 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 BMP2P12643 396 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 ETFAP13804 333 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 HPGDP15428 266 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 BMP7P18075 431 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 ENDOUP21128 410 aaKnown RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 CRATP43155 626 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 CLK3P49761 638 aaKnown RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 DSTNP60981 165 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 HPCAP84074 193 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 STX5Q13190 355 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 NFYCQ13952 458 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 CYLC2Q14093 348 aaPredicted RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 SF3B4Q15427 424 aaKnown RBP eCLIP10.77□□□□□ -0.694e-7■■■□□ 17.6
SQSTM1-206ENST00000466342 RGNQ15493 299 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 TRMT5Q32P41 509 aaKnown RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 MMEL1Q495T6 779 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 C1orf185Q5T7R7 199 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 RIPPLY2Q5TAB7 128 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 TIGD3Q6B0B8 471 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 REP15Q6BDI9 236 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 WDSUB1Q8N9V3 476 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 ZNF527Q8NB42 609 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 OR1J4Q8NGS1 313 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 RP9Q8TA86 221 aaKnown RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 RNASE6Q93091 150 aaKnown RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 ROPN1LQ96C74 230 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 GNRHR2Q96P88 292 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 CGREF1Q99674 301 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 PIP5K1AQ99755 562 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 CPPED1Q9BRF8 314 aaPredicted RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 TBL1XR1Q9BZK7 514 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 RTN4RQ9BZR6 473 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 HOXD1Q9GZZ0 328 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 UBQLN3Q9H347 655 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 POLE3Q9NRF9 147 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 SDHAF3Q9NRP4 125 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 THUMPD1Q9NXG2 353 aaKnown RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 ALKBH4Q9NXW9 302 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 SPRR3Q9UBC9 169 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 P2RX2Q9UBL9 471 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 FOXD3Q9UJU5 478 aaPredicted RBP10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 CORO2BQ9UQ03 480 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 LIPT1Q9Y234 373 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 C15orf41Q9Y2V0 281 aa10.77□□□□□ -0.69
SQSTM1-206ENST00000466342 NPIPA5A0A0B4J1W7 369 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 LOC100653049A0A140TA62 436 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 A0A1W2PQD3 144 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 PRAMEF27A3QJZ7 478 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 TRIM64A6NGJ6 449 aa10.76□□□□□ -0.69
SQSTM1-206ENST00000466342 TRIM64BA6NI03 449 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms