RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ISCA2Q86U28 154 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PDSS2Q86YH6 399 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 FUNDC1Q8IVP5 155 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 FBXO39Q8N4B4 442 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF383Q8NA42 475 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 OR2L2Q8NH16 312 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 SCARB1Q8WTV0 552 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CPNE2Q96FN4 548 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 NARS2Q96I59 477 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 C4orf36Q96KX1 117 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 RPL10LQ96L21 214 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 LRR1Q96L50 414 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF599Q96NL3 588 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PRAP1Q96NZ9 151 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC38A2Q96QD8 506 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 NPY6RQ99463 290 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 IL22Q9GZX6 179 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 EPHX3Q9H6B9 360 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 TXNRD2Q9NNW7 524 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 ADA2Q9NZK5 511 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 LRIT1Q9P2V4 623 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CLEC4EQ9ULY5 219 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 BAIAP2Q9UQB8 552 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 RASD1Q9Y272 281 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PPP2R2CQ9Y2T4 447 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PCDHB7Q9Y5E2 793 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CDH23Q9H251 3354 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 MUC3AQ02505 3323 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 A0A1B0GTW7 788 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 A0A1B0GVM2 712 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 BTBD18B2RXH4 712 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 J3QRK9 145 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TNFSF14O43557 240 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 IGLV1-40P01703 118 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 HPXP02790 462 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 HTR1AP08908 422 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 HOXC6P09630 235 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 UBCP0CG48 685 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ZP3P21754 424 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 CEACAM8P31997 349 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 GPR12P47775 334 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 RGS6P49758 472 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 JAK3P52333 1124 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PNLIPRP2P54317 469 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SNU13P55769 128 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 VSX2P58304 361 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ERVFRD-1P60508 538 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC7A9P82251 487 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SORDQ00796 357 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ZFP36L1Q07352 338 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 APOFQ13790 326 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TAB1Q15750 504 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 KIF19Q2TAC6 998 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 MGAT5BQ3V5L5 792 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 IFI44LQ53G44 452 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 LPCAT4Q643R3 524 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 XKRXQ6PP77 449 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 IZUMO2Q6UXV1 221 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 LYG2Q86SG7 212 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TRABD2AQ86V40 505 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 HSD17B11Q8NBQ5 300 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 CAMKVQ8NCB2 501 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 OR10W1Q8NGF6 305 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 OR13C5Q8NGS8 318 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 RHEBL1Q8TAI7 183 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM171Q8WVE6 324 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 DNAJB3Q8WWF6 145 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SEMA4DQ92854 862 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 FBXL8Q96CD0 374 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 MED8Q96G25 268 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 MARK4Q96L34 752 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 HARBI1Q96MB7 349 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 AMDHD1Q96NU7 426 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 STACQ99469 402 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ULBP1Q9BZM6 244 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 MIXL1Q9H2W2 232 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SMOC2Q9H3U7 446 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF696Q9H7X3 374 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TLE6Q9H808 572 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 WDR41Q9HAD4 459 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 C6orf50Q9HD87 102 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 XPNPEP3Q9NQH7 507 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PLSCR3Q9NRY6 295 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ZDHHC2Q9UIJ5 367 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ERRFI1Q9UJM3 462 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 IKZF3Q9UKT9 509 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 GSTK1Q9Y2Q3 226 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 A0A0G2JMZ2 1700 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TRBV2A0A0J9YWF9 115 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TUBAL3A6NHL2 446 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 VSTM2BA6NLU5 285 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ARHGEF33A8MVX0 844 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 KCNK1O00180 336 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 INPP4BO15327 924 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SNAI2O43623 268 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 CYP7B1O75881 506 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 OR2J2O76002 312 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TTC4O95801 387 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 IGF2P01344 180 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms