RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 B4GALNT2Q8NHY0 566 aa13.36□□□□□ -0.27
TNF-208ENST00000449264 JSRP1Q96MG2 331 aaPredicted RBP13.36□□□□□ -0.27
TNF-208ENST00000449264 LAT2Q9GZY6 243 aa13.36□□□□□ -0.27
TNF-208ENST00000449264 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.36□□□□□ -0.27
TNF-208ENST00000449264 TIMMDC1Q9NPL8 285 aa13.36□□□□□ -0.27
TNF-208ENST00000449264 AGPAT4Q9NRZ5 378 aa13.36□□□□□ -0.27
TNF-208ENST00000449264 CNIH4Q9P003 139 aa13.36□□□□□ -0.27
TNF-208ENST00000449264 STX18Q9P2W9 335 aaKnown RBP13.36□□□□□ -0.27
TNF-208ENST00000449264 HRH3Q9Y5N1 445 aa13.36□□□□□ -0.27
TNF-208ENST00000449264 A0A087WV48 116 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 GNB5O14775 395 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 CLOCKO15516 846 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 EIF4E2O60573 245 aaKnown RBP13.35□□□□□ -0.27
TNF-208ENST00000449264 DEAF1O75398 565 aaPredicted RBP13.35□□□□□ -0.27
TNF-208ENST00000449264 RHCEP18577 417 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 RRM2P31350 389 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 DNASE1L1P49184 302 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 C17orf67Q0P5P2 114 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 EPS8Q12929 822 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 PPP1R8Q12972 351 aaKnown RBP13.35□□□□□ -0.27
TNF-208ENST00000449264 KCNAB2Q13303 367 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 SNTA1Q13424 505 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 PIN1Q13526 163 aaPredicted RBP13.35□□□□□ -0.27
TNF-208ENST00000449264 INPP5JQ15735 1006 aaPredicted RBP13.35□□□□□ -0.27
TNF-208ENST00000449264 OR2T5Q6IEZ7 315 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 SLC30A6Q6NXT4 461 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 LSRQ86X29 649 aaPredicted RBP13.35□□□□□ -0.27
TNF-208ENST00000449264 CADM2Q8N3J6 435 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 ICA1LQ8NDH6 482 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 OR2T29Q8NH02 315 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 PRRC1Q96M27 445 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 ZNF347Q96SE7 839 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 PIP5K1AQ99755 562 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 KLHDC3Q9BQ90 382 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 HES7Q9BYE0 225 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 EXOSC3Q9NQT5 275 aaKnown RBP13.35□□□□□ -0.27
TNF-208ENST00000449264 KLHL1Q9NR64 748 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 SDHAF3Q9NRP4 125 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 MED11Q9P086 117 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 RIMS3Q9UJD0 308 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 U3KQV3 271 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 TPRP12270 2363 aaKnown RBP13.35□□□□□ -0.27
TNF-208ENST00000449264 ACACBO00763 2458 aa13.35□□□□□ -0.27
TNF-208ENST00000449264 DSPP15924 2871 aaKnown RBP13.34□□□□□ -0.27
TNF-208ENST00000449264 FFAR1O14842 300 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 CDC40O60508 579 aaKnown RBP eCLIP13.34□□□□□ -0.27
TNF-208ENST00000449264 E2F6O75461 281 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 LINGO3P0C6S8 592 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 UQCRBP14927 111 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 ACAA2P42765 397 aaKnown RBP13.34□□□□□ -0.27
TNF-208ENST00000449264 P2RX1P51575 399 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 CDH12P55289 794 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 COPZ1P61923 177 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 TMEM81Q6P7N7 255 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 TOR1AIP2Q8NFQ8 470 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 OR52J3Q8NH60 311 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 ZNF563Q8TA94 476 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 RNF217Q8TC41 542 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 ADAMTS16Q8TE57 1224 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 PHF10Q8WUB8 498 aaKnown RBP13.34□□□□□ -0.27
TNF-208ENST00000449264 SLC35B4Q969S0 331 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 ZNF559Q9BR84 538 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 ANGPTL4Q9BY76 406 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 RNF32Q9H0A6 362 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 EVA1AQ9H8M9 152 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 REEP1Q9H902 201 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 PROK2Q9HC23 129 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 VNN3Q9NY84 501 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 DNAJB9Q9UBS3 223 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 ICAM5Q9UMF0 924 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 A4GNTQ9UNA3 340 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 CSAG2Q9Y5P2 127 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 B4DXG7 233 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 ADAMDEC1O15204 470 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 ZZEF1O43149 2961 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 FUT4P22083 530 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 SLC6A8P48029 635 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 IST1P53990 364 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 CBFBQ13951 182 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 OR1Q1Q15612 314 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 FGD3Q5JSP0 725 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 PACS2Q86VP3 889 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 OR4K17Q8NGC6 315 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 EXTL1Q92935 676 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 CENPNQ96H22 339 aaPredicted RBP13.34□□□□□ -0.27
TNF-208ENST00000449264 C5orf34Q96MH7 638 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 BDH2Q9BUT1 245 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 FNDC11Q9BVV2 318 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 DSN1Q9H410 356 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 TMEM27Q9HBJ8 222 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 DEPPQ9NTK1 212 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 C6orf203Q9P0P8 240 aaPredicted RBP13.34□□□□□ -0.27
TNF-208ENST00000449264 RPS6KB2Q9UBS0 482 aa13.34□□□□□ -0.27
TNF-208ENST00000449264 SAMHD1Q9Y3Z3 626 aaKnown RBP13.34□□□□□ -0.27
TNF-208ENST00000449264 ANKRD33BA6NCL7 494 aa13.33□□□□□ -0.28
TNF-208ENST00000449264 SAC3D1A6NKF1 404 aa13.33□□□□□ -0.28
TNF-208ENST00000449264 FMO6PO60774 539 aa13.33□□□□□ -0.28
TNF-208ENST00000449264 PRSS23O95084 383 aa13.33□□□□□ -0.28
TNF-208ENST00000449264 IFNA8P32881 189 aa13.33□□□□□ -0.28
TNF-208ENST00000449264 IDH2P48735 452 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms