RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 KLHL15Q96M94 604 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 RNF145Q96MT1 663 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 GSX2Q9BZM3 304 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 TUBB1Q9H4B7 451 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 ESRP2Q9H6T0 727 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 EXD2Q9NVH0 621 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 NOP53Q9NZM5 478 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 KLHL9Q9P2J3 617 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 PRDM4Q9UKN5 801 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 DTNAQ9Y4J8 743 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 A0A0J9YW62 118 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 ZNF195O14628 629 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 STX11O75558 287 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 SLU7O95391 586 aaKnown RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 GUSBP08236 651 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 IL32P24001 234 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 AGTR1P30556 359 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 C21orf58P58505 322 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 RAC3P60763 192 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 CSNK2A1P68400 391 aaPredicted RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 PPP2R2BQ00005 443 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 EMX2Q04743 252 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 SELENBP1Q13228 472 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 LASP1Q14847 261 aaKnown RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 DPY19L1Q2PZI1 675 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 CTU2Q2VPK5 515 aaKnown RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 ZNF385BQ569K4 471 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 XKR7Q5GH72 579 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 EXOSC6Q5RKV6 272 aaKnown RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 C6orf136Q5SQH8 315 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 DCST2Q5T1A1 773 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 C1QTNF12Q5T7M4 302 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 ATAD3BQ5T9A4 648 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 IL23RQ5VWK5 629 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 ANKRD34AQ69YU3 496 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 ADAM5Q6NVV9 412 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 EMBQ6PCB8 327 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 ZNF704Q6ZNC4 412 aaPredicted RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 ZNF550Q7Z398 422 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 YTHDF3Q7Z739 585 aaKnown RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 GALNT10Q86SR1 603 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 CROCCP2Q86T23 111 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 P2RY8Q86VZ1 359 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 NUDCD3Q8IVD9 361 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 LRRC34Q8IZ02 419 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 GATSQ8NAP1 163 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 OR7A2PQ8NGA2 310 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 OR5W2Q8NH69 310 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 CLHC1Q8NHS4 586 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 TCP10LQ8TDR4 215 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 RNF128Q8TEB7 428 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 SLC25A43Q8WUT9 341 aaPredicted RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 ST8SIA1Q92185 356 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 TUBGCP3Q96CW5 907 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 MUCL1Q96DR8 90 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 ARSGQ96EG1 525 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 C16orf58Q96GQ5 468 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 RADILQ96JH8 1075 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 ADGRG7Q96K78 797 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 MARK4Q96L34 752 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 DUSP26Q9BV47 211 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 ACTR6Q9GZN1 396 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 NMUR2Q9GZQ4 415 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 TNFRSF12AQ9NP84 129 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 FAIMQ9NVQ4 179 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 KLHL13Q9P2N7 655 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 LGALS13Q9UHV8 139 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 ICAM5Q9UMF0 924 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 CARD8Q9Y2G2 431 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 SPIN1Q9Y657 262 aaPredicted RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 FREM1Q5H8C1 2179 aa6.32□□□□□ -1.4
VPS41-208ENST00000448833 HEATR1Q9H583 2144 aaKnown RBP6.32□□□□□ -1.4
VPS41-208ENST00000448833 A0A1W2PPR1 153 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 POM121CA8CG34 1229 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 C17orf51A8MQB3 221 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 RNASET2O00584 256 aaKnown RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 HS3ST1O14792 307 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 ANKRD28O15084 1053 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 BIRC5O15392 142 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 KLF4O43474 513 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 CHRNGP07510 517 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 BPGMP07738 259 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 CD3EP07766 207 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 MYZAPP0CAP1 466 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 LAMP1P11279 417 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 UBL4AP11441 157 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PRKCAP17252 672 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PGCP20142 388 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 MATN1P21941 496 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 CCKARP32238 428 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 SFTPDP35247 375 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 SLC6A8P48029 635 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 PTH2RP49190 550 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 CLK1P49759 484 aaKnown RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 ANXA11P50995 505 aaKnown RBP6.31□□□□□ -1.4
VPS41-208ENST00000448833 MAP2K6P52564 334 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 CLDN8P56748 225 aa6.31□□□□□ -1.4
VPS41-208ENST00000448833 TXNL4AP83876 142 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms