RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ATF4P18848 351 aaPredicted RBP11.06□□□□□ -0.64
MSH6-204ENST00000445503 OR1Q1Q15612 314 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 GXYLT1Q4G148 440 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 FAAH2Q6GMR7 532 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 SLC48A1Q6P1K1 146 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 RFPL4BQ6ZWI9 263 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 MBOAT2Q6ZWT7 520 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 UBE3DQ7Z6J8 389 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 LRRC28Q86X40 367 aaPredicted RBP11.06□□□□□ -0.64
MSH6-204ENST00000445503 FAM109AQ8N4B1 249 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 OR2A1Q8NGT9 310 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 ABHD4Q8TB40 342 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 MRPL48Q96GC5 212 aaKnown RBP11.06□□□□□ -0.64
MSH6-204ENST00000445503 GPR174Q9BXC1 333 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 OR6C2Q9NZP2 312 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 CDHR4A6H8M9 788 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 SURF4O15260 269 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 SCO1O75880 301 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 ARL6IP5O75915 188 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 HLA-DMAP28067 261 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 SHC2P98077 582 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 E2F1Q01094 437 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 DUSP2Q05923 314 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 TRMT12Q53H54 448 aaKnown RBP11.06□□□□□ -0.64
MSH6-204ENST00000445503 ZNF628Q5EBL2 1059 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 LILRA6Q6PI73 481 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 ZNF620Q6ZNG0 422 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 FTMTQ8N4E7 242 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 TMEM5Q9Y2B1 443 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 A0A0A6YYJ9 748 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 PEX12O00623 359 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 C1QBP02746 253 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 FPR3P25089 353 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 DUSP5Q16690 384 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.06□□□□□ -0.641e-10■■■□□ 17.6
MSH6-204ENST00000445503 PYHIN1Q6K0P9 492 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 FAM220AQ7Z4H9 259 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 SIAH3Q8IW03 269 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 MORN4Q8NDC4 146 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 OR2L3Q8NG85 312 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 OR7G2Q8NG99 324 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 GCDHQ92947 438 aaPredicted RBP11.06□□□□□ -0.64
MSH6-204ENST00000445503 KIAA1143Q96AT1 154 aaPredicted RBP11.06□□□□□ -0.64
MSH6-204ENST00000445503 RBM18Q96H35 190 aaKnown RBP11.06□□□□□ -0.64
MSH6-204ENST00000445503 MS4A4EQ96PG1 132 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 ZNF559Q9BR84 538 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 SLC6A17Q9H1V8 727 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 TCF7L1Q9HCS4 588 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 PRSS16Q9NQE7 514 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 MAN2C1Q9NTJ4 1040 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 STON1Q9Y6Q2 735 aa11.06□□□□□ -0.64
MSH6-204ENST00000445503 PAPLNO95428 1278 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 AGR2O95994 175 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 TYRP1P17643 537 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 HSD17B12Q53GQ0 312 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 HBMQ6B0K9 141 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 TNFRSF13CQ96RJ3 184 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 TMEM106CQ9BVX2 250 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 ADAM29Q9UKF5 820 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 SCN2AQ99250 2005 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 DSPPQ9NZW4 1301 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 OR6C74A6NCV1 312 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 PEPDP12955 493 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 F3P13726 295 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 TRA2BP62995 288 aaKnown RBP11.05□□□□□ -0.64
MSH6-204ENST00000445503 ZNF542PQ5EBM4 170 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 METAP1DQ6UB28 335 aaPredicted RBP11.05□□□□□ -0.64
MSH6-204ENST00000445503 ZNF765Q7L2R6 523 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 GPALPP1Q8IXQ4 340 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 CEP76Q8TAP6 659 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 NR4A3Q92570 626 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 FN3KQ9H479 309 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 RANBP3Q9H6Z4 567 aaPredicted RBP11.05□□□□□ -0.64
MSH6-204ENST00000445503 LYARQ9NX58 379 aaKnown RBP11.05□□□□□ -0.64
MSH6-204ENST00000445503 TESQ9UGI8 421 aaKnown RBP11.05□□□□□ -0.64
MSH6-204ENST00000445503 TEX46H3BTG2 121 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 CDC42EP2O14613 210 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 FMO6PO60774 539 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 IFNA7P01567 189 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 LCN1P31025 176 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 GDI1P31150 447 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 SLC25A35Q3KQZ1 300 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 Q5BKY6 102 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 THAP4Q8WY91 577 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 RAB7BQ96AH8 199 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 NARS2Q96I59 477 aaKnown RBP11.05□□□□□ -0.64
MSH6-204ENST00000445503 LRRC3BQ96PB8 259 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 NIPAL2Q9H841 368 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 APOBEC3BQ9UH17 382 aaKnown RBP11.05□□□□□ -0.64
MSH6-204ENST00000445503 SLC23A1Q9UHI7 598 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 IER3IP1Q9Y5U9 82 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 BRCA2P51587 3418 aa11.05□□□□□ -0.64
MSH6-204ENST00000445503 CEP290O15078 2479 aa11.04□□□□□ -0.64
MSH6-204ENST00000445503 E9PI62 339 aa11.04□□□□□ -0.64
MSH6-204ENST00000445503 M0R233 179 aa11.04□□□□□ -0.64
MSH6-204ENST00000445503 SERPINA3P01011 423 aa11.04□□□□□ -0.64
MSH6-204ENST00000445503 TCRBP04435 133 aa11.04□□□□□ -0.64
MSH6-204ENST00000445503 C4BPBP20851 252 aa11.04□□□□□ -0.64
MSH6-204ENST00000445503 CFL1P23528 166 aaKnown RBP11.04□□□□□ -0.64
MSH6-204ENST00000445503 SLC6A6P31641 620 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms