RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 SLC35A3Q9Y2D2 325 aa9.66□□□□□ -0.86
CD44-210ENST00000434472 PIAS3Q9Y6X2 628 aa9.66□□□□□ -0.86
CD44-210ENST00000434472 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.65□□□□□ -0.86
CD44-210ENST00000434472 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.65□□□□□ -0.86
CD44-210ENST00000434472 TTC36A6NLP5 189 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 PEX12O00623 359 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 OR10H2O60403 315 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 PTP4A3O75365 173 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 SEMA4FO95754 770 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 GKN3PP0CG01 181 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 SLC2A2P11168 524 aaPredicted RBP9.65□□□□□ -0.86
CD44-210ENST00000434472 TBXA2RP21731 343 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 LSSP48449 732 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 VSX2P58304 361 aaPredicted RBP9.65□□□□□ -0.86
CD44-210ENST00000434472 FXYD6P3P58550 94 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 EXOSC7Q15024 291 aaKnown RBP9.65□□□□□ -0.86
CD44-210ENST00000434472 ARHGAP11AQ6P4F7 1023 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 FIGNL1Q6PIW4 674 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 WDR88Q6ZMY6 472 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 ZNF550Q7Z398 422 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 TPRA1Q86W33 373 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 SLC37A3Q8NCC5 494 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 TMEM52Q8NDY8 209 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 SIMC1Q8NDZ2 872 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 OR52R1Q8NGF1 315 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 OR6F1Q8NGZ6 308 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 NACC2Q96BF6 587 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 AHCYL2Q96HN2 611 aaKnown RBP9.65□□□□□ -0.86
CD44-210ENST00000434472 FRMD6Q96NE9 622 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 NDC1Q9BTX1 674 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 SEMA6CQ9H3T2 930 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 PPP1R3EQ9H7J1 279 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 RNF121Q9H920 327 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 EVA1BQ9NVM1 165 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 HAO2Q9NYQ3 351 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 CLEC1BQ9P126 229 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 IL20RAQ9UHF4 553 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 KCNE5Q9UJ90 142 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 MRPS33Q9Y291 106 aaKnown RBP9.65□□□□□ -0.86
CD44-210ENST00000434472 TICRRQ7Z2Z1 1910 aa9.65□□□□□ -0.86
CD44-210ENST00000434472 A0A0B4J2E0 115 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 A0A1B0GX12 115 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 TCRBV21S2A2A0A5A6 115 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 GXYLT2A0PJZ3 443 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 OR5K3A6NET4 321 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 CD8B2A6NJW9 211 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 FAM183AA6NL82 134 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 IDH3BO43837 385 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 TRIM3O75382 744 aaPredicted RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 CBX7O95931 251 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 CT62P0C5K7 136 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 SAGP10523 405 aaPredicted RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 CD8BP10966 210 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 PVRP15151 417 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 ZNF3P17036 446 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 MYL9P24844 172 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 HLA-DMAP28067 261 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 HOXD12P35452 270 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 NUDT1P36639 197 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 MAP2K3P46734 347 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 INPP1P49441 399 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 LBX1P52954 281 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 RPS7P62081 194 aaKnown RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 IL18Q14116 193 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 SF3A2Q15428 464 aaKnown RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 ZFP69Q49AA0 526 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 KLHL12Q53G59 568 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 CCDC92Q53HC0 331 aaPredicted RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 ATAD3CQ5T2N8 411 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 HBMQ6B0K9 141 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 PAMR1Q6UXH9 720 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 TMEM91Q6ZNR0 172 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 RTL4Q6ZR62 310 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 PRSS41Q7RTY9 318 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 CMIPQ8IY22 773 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 TMEFF1Q8IYR6 380 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 Q8N402 240 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 TMEM99Q8N816 258 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 OR13H1Q8NG92 308 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 OR5W2Q8NH69 310 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 MRPL48Q96GC5 212 aaKnown RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 UBL7Q96S82 380 aaPredicted RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 TEAD3Q99594 435 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 FOLH1BQ9HBA9 442 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 ATP13A2Q9NQ11 1180 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 DDX28Q9NUL7 540 aaKnown RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 TMEM74BQ9NUR3 256 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 FBXO34Q9NWN3 711 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 RPS6KB2Q9UBS0 482 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 KLHL21Q9UJP4 597 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 MMP17Q9ULZ9 603 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 SNRNP200O75643 2136 aaKnown RBP9.64□□□□□ -0.87
CD44-210ENST00000434472 NPIPA5A0A0B4J1W7 369 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 LINC00854A0A1B0GVQ3 168 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 A0A1B0GWA3 101 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 FAM172BPA6NC97 362 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 CENPXA8MT69 81 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 FAM25AB3EWG3 89 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 FAM25CB3EWG5 89 aa9.64□□□□□ -0.87
CD44-210ENST00000434472 FAM25GB3EWG6 89 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms