RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SSC4DQ8WTU2 575 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 ZNF524Q96C55 264 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 WDYHV1Q96HA8 205 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 RNF145Q96MT1 663 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 DMRTA2Q96SC8 542 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 PRDM14Q9GZV8 571 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 LAT2Q9GZY6 243 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 TMEM38AQ9H6F2 299 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 MTHFD2LQ9H903 347 aaPredicted RBP11.29□□□□□ -0.6
SKA1-203ENST00000417656 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.29□□□□□ -0.6
SKA1-203ENST00000417656 ALKBH4Q9NXW9 302 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 ZNF443Q9Y2A4 671 aaPredicted RBP11.29□□□□□ -0.6
SKA1-203ENST00000417656 SLC35A3Q9Y2D2 325 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 FAM215AQ9Y5M1 114 aa11.29□□□□□ -0.6
SKA1-203ENST00000417656 USP9XQ93008 2570 aaPredicted RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 HEATR5AQ86XA9 2040 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 A0A0G2JPF8 293 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 KDM4EB2RXH2 506 aaPredicted RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 HNRNPCL2B2RXH8 293 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 HNRNPCL3B7ZW38 293 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 E9PLN8 166 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 H0Y3Z8 333 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 AIM2O14862 343 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 SEC14L5O43304 696 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 HNRNPCL1O60812 293 aaKnown RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 ZG16O60844 167 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 WDR1O75083 606 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 PGM3O95394 542 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 FAM107AO95990 144 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 LINGO3P0C6S8 592 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 HNRNPCL4P0DMR1 293 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 IL7RP16871 459 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ZNF708P17019 499 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 POU3F2P20265 443 aaPredicted RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 CHMP24386 653 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ACVR2AP27037 513 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 AQP1P29972 269 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ADH7P40394 386 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 LHX2P50458 406 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 CLDN18P56856 261 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 KCNJ10P78508 379 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ADORA2A-AS1P86434 159 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 SRYQ05066 204 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 QPRTQ15274 297 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 TOMM34Q15785 309 aaPredicted RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 ADRM1Q16186 407 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 GLYR1Q49A26 553 aaPredicted RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 ACSF3Q4G176 576 aaPredicted RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 LIN52Q52LA3 116 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 C1orf185Q5T7R7 199 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 PRAMEF8Q5VWM4 474 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 PRAMEF7Q5VXH5 474 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 RTL6Q6ICC9 239 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 NANOGP8Q6NSW7 305 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ENPP6Q6UWR7 440 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 NET1Q7Z628 596 aaPredicted RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 CMIPQ8IY22 773 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ZZZ3Q8IYH5 903 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 GTPBP8Q8N3Z3 284 aaPredicted RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 TOR1AIP2Q8NFQ8 470 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 OR8J3Q8NGG0 315 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 OR5W2Q8NH69 310 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 OR10A6Q8NH74 314 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 POC1BQ8TC44 478 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 GPR119Q8TDV5 335 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 SMPDL3BQ92485 455 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 CNOT9Q92600 299 aaKnown RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 PMM1Q92871 262 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ZBTB8AQ96BR9 441 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 VKORC1Q9BQB6 163 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 PIGQQ9BRB3 760 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 KAT8Q9H7Z6 458 aaKnown RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 NANOGQ9H9S0 305 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 CACYBPQ9HB71 228 aaKnown RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 BCL2L10Q9HD36 194 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 GID8Q9NWU2 228 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 DNAJB12Q9NXW2 375 aaKnown RBP11.28□□□□□ -0.6
SKA1-203ENST00000417656 ADAM21Q9UKJ8 722 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ANGPT4Q9Y264 503 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 KIAA1549Q9HCM3 1950 aa11.28□□□□□ -0.6
SKA1-203ENST00000417656 ARHGAP21Q5T5U3 1957 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 PHF3Q92576 2039 aaKnown RBP11.27□□□□□ -0.61
SKA1-203ENST00000417656 C7orf72A4D263 438 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 AP3D1O14617 1153 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 ADAM11O75078 769 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 DCTN3O75935 186 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 NPPAP01160 153 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 THBS1P07996 1170 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 PRKCAP17252 672 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 SLC6A2P23975 617 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 PCGF2P35227 344 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 CPA2P48052 419 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 NUDT2P50583 147 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 EEF1A1P68104 462 aaKnown RBP11.27□□□□□ -0.61
SKA1-203ENST00000417656 CBFBQ13951 182 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 GKAP1Q5VSY0 366 aaPredicted RBP11.27□□□□□ -0.61
SKA1-203ENST00000417656 REEP3Q6NUK4 255 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 RPTNQ6XPR3 784 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 PM20D2Q8IYS1 436 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 UBQLNLQ8IYU4 475 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms