RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PRODHO43272 600 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 MRPS14O60783 128 aaKnown RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 H2AFB2P0C5Z0 115 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 ADH5P11766 374 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SAXO2Q658L1 398 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 BBS1Q8NFJ9 593 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 OR2T33Q8NG76 320 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 ZG16BQ96DA0 208 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 BARHL1Q9BZE3 327 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 WDR26Q9H7D7 661 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 GFOD1Q9NXC2 390 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SCN10AQ9Y5Y9 1956 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 KCNE1BA0A087WTH5 132 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 hCG_1807616A0A1W2PRN6 198 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 TSTD3H0UI37 97 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 H3BQ06 376 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 GABRPO00591 440 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SLCO2B1O94956 709 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 ADH1CP00326 375 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 MEOX2P50222 304 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 CDC20Q12834 499 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 ILKQ13418 452 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 DYRK1AQ13627 763 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 TP53I3Q53FA7 332 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 RPTNQ6XPR3 784 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 CCDC190Q86UF4 302 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 AMER3Q8N944 861 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 NDC1Q9BTX1 674 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 KATNB1Q9BVA0 655 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 PLA2G12AQ9BZM1 189 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 LMAN2LQ9H0V9 348 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 NIPAL2Q9H841 368 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 MYNNQ9NPC7 610 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 RPS10P5Q9NQ39 176 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 TRIM36Q9NQ86 728 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 TUBG2Q9NRH3 451 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 OR51B4Q9Y5P0 310 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SIP14410 1827 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 RP1L1Q8IWN7 2480 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 A0A0G2JMZ2 1700 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SCN3AQ9NY46 2000 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 A0A0B4J203 849 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 LEUTXA8MZ59 168 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 TMPRSS11DO60235 418 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 LDOC1O95751 146 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 EPCAMP16422 314 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 FABP5Q01469 135 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF155Q12901 538 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SNTB2Q13425 540 aaKnown RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 NFATC4Q14934 902 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 GPNMBQ14956 572 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 OPCMLQ14982 345 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 FAM71E1Q6IPT2 247 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 PRICKLE2Q7Z3G6 844 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SETD6Q8TBK2 473 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 ZMYND19Q96E35 227 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 GPATCH2Q9NW75 528 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 SLC7A7Q9UM01 511 aa11.17□□□□□ -0.62
HMGB1-206ENST00000405805 EXOSC1Q9Y3B2 195 aaKnown RBP11.17□□□□□ -0.62
HMGB1-206ENST00000405805 IRGMA1A4Y4 181 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 HYKKA2RU49 373 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 LCMT2O60294 686 aaKnown RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 POU3F3P20264 500 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 EDNRAP25101 427 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 RPS5P46782 204 aaKnown RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 CLDN12P56749 244 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 FBXW4P57775 412 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 TAS2R38P59533 333 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 COTL1Q14019 142 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 IRF3Q14653 427 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 BEX5Q5H9J7 111 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 NKAIN4Q8IVV8 208 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 PRSS58Q8IYP2 241 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 OR4K13Q8NH42 304 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 GOT1L1Q8NHS2 421 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 NKD1Q969G9 470 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ALG14Q96F25 216 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 THAP7Q9BT49 309 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 TMEM27Q9HBJ8 222 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 PHPT1Q9NRX4 125 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 PLCXD1Q9NUJ7 323 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 CBX7O95931 251 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 PRH1P02810 166 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 MT-ND4P03905 459 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 IL1RNP18510 177 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 S100PP25815 95 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 PSMB10P40306 273 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ACTR1BP42025 376 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 EPHA5P54756 1037 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ACTR1AP61163 376 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 PDZD11Q5EBL8 140 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 OR4C11Q6IEV9 310 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 HTR3DQ70Z44 454 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 TECPR1Q7Z6L1 1165 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 OR56A3Q8NH54 315 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ORAI1Q96D31 301 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF514Q96K75 400 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 MCCC1Q96RQ3 725 aaPredicted RBP11.16□□□□□ -0.62
HMGB1-206ENST00000405805 ZNF649Q9BS31 505 aa11.16□□□□□ -0.62
HMGB1-206ENST00000405805 HS3ST2Q9Y278 367 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms