RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CLPPQ16740 277 aaPredicted RBP23.21■■□□□ 1.31
SHOX2-201ENST00000389589 KLHL22Q53GT1 634 aa23.21■■□□□ 1.31
SHOX2-201ENST00000389589 ULK3Q6PHR2 472 aa23.21■■□□□ 1.31
SHOX2-201ENST00000389589 OR4Q3Q8NH05 313 aa23.21■■□□□ 1.31
SHOX2-201ENST00000389589 BPIFA2Q96DR5 249 aa23.21■■□□□ 1.31
SHOX2-201ENST00000389589 PLEKHA8Q96JA3 519 aa23.21■■□□□ 1.31
SHOX2-201ENST00000389589 OR6C1Q96RD1 312 aa23.21■■□□□ 1.31
SHOX2-201ENST00000389589 NXF5Q9H1B4 397 aaKnown RBP23.21■■□□□ 1.31
SHOX2-201ENST00000389589 COL6A3P12111 3177 aa23.2■■□□□ 1.31
SHOX2-201ENST00000389589 LIPAP38571 399 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 EFNA3P52797 238 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 ALG10BQ5I7T1 473 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 SLC30A6Q6NXT4 461 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 BCDIN3DQ7Z5W3 292 aaKnown RBP23.2■■□□□ 1.3
SHOX2-201ENST00000389589 BMP8AQ7Z5Y6 402 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 ADIPOR1Q96A54 375 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 EFHD2Q96C19 240 aaPredicted RBP23.2■■□□□ 1.3
SHOX2-201ENST00000389589 ZNF426Q9BUY5 554 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 NUDT9Q9BW91 350 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 COPS7AQ9UBW8 275 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 RARRES3Q9UL19 164 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 SURF4O15260 269 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 ADAM11O75078 769 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 RCBTB2O95199 551 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 MAKP20794 623 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 COX15Q7KZN9 410 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 OR52L1Q8NGH7 329 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 FANK1Q8TC84 345 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 SAMD8Q96LT4 415 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 CCDC74BQ96LY2 380 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 RACGAP1Q9H0H5 632 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 SYNDIG1Q9H7V2 258 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 C20orf141Q9NUB4 165 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 MRPS18AQ9NVS2 196 aaKnown RBP23.2■■□□□ 1.3
SHOX2-201ENST00000389589 ERGIC3Q9Y282 383 aa23.2■■□□□ 1.3
SHOX2-201ENST00000389589 IGLV3-12A0A075B6K2 115 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 C2orf92A0A1B0GVN3 265 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 KDM4EB2RXH2 506 aaPredicted RBP23.19■■□□□ 1.3
SHOX2-201ENST00000389589 CDK4P11802 303 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 CKMT1AP12532 417 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 SLC46A3Q7Z3Q1 461 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 PRSS58Q8IYP2 241 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 ASCC3Q8N3C0 2202 aaKnown RBP23.19■■□□□ 1.3
SHOX2-201ENST00000389589 IFI44Q8TCB0 444 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 OR52D1Q9H346 318 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 CTSFQ9UBX1 484 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 HEATR5AQ86XA9 2040 aa23.19■■□□□ 1.3
SHOX2-201ENST00000389589 ARHGAP33O14559 1287 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 HPGDP15428 266 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 PTNP21246 168 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 DUSP3P51452 185 aaPredicted RBP23.18■■□□□ 1.3
SHOX2-201ENST00000389589 ARMCX4Q5H9R4 360 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 HLA-DQA1Q5Y7H0 255 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 SLC23A3Q6PIS1 610 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 LINC00114Q6XXX2 140 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 LAPTM4BQ86VI4 370 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 DTWD2Q8NBA8 298 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 ANKK1Q8NFD2 765 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 OR1N1Q8NGS0 311 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 HHATLQ9HCP6 504 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 ATP13A2Q9NQ11 1180 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 SLC22A11Q9NSA0 550 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 DIMT1Q9UNQ2 313 aaKnown RBP23.18■■□□□ 1.3
SHOX2-201ENST00000389589 OR6C76A6NM76 312 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 PATE3B3GLJ2 98 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 KPNA4O00629 521 aaPredicted RBP23.18■■□□□ 1.3
SHOX2-201ENST00000389589 SYPP08247 313 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 ADRA2AP08913 450 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 HBQ1P09105 142 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 BMP7P18075 431 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 COPZ1P61923 177 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 DAB2P98082 770 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 TRIM61Q5EBN2 209 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 CADM2Q8N3J6 435 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 FAM71CQ8NEG0 241 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 DNAJA4Q8WW22 397 aaPredicted RBP23.18■■□□□ 1.3
SHOX2-201ENST00000389589 RFKQ969G6 155 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 LMF1Q96S06 567 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 UBQLN3Q9H347 655 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 TAS2R16Q9NYV7 291 aa23.18■■□□□ 1.3
SHOX2-201ENST00000389589 SCDO00767 359 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 SCRG1O75711 98 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 RAB36O95755 333 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 GPR143P51810 404 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 RAB40BQ12829 278 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 EBPQ15125 230 aaKnown RBP23.17■■□□□ 1.3
SHOX2-201ENST00000389589 MED22Q15528 200 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 STT3BQ8TCJ2 826 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 GAL3ST4Q96RP7 486 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 MND1Q9BWT6 205 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 MEPEQ9NQ76 525 aaPredicted RBP23.17■■□□□ 1.3
SHOX2-201ENST00000389589 EFCAB9A8MZ26 197 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 M0R3G1 203 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 UTS2O95399 124 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 GRK5P34947 590 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 FNDC7Q5VTL7 733 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 KIRREL2Q6UWL6 708 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 SLC29A4Q7RTT9 530 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 SLC34A3Q8N130 599 aa23.17■■□□□ 1.3
SHOX2-201ENST00000389589 TMEM105Q8N8V8 129 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms