RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 EMC9Q9Y3B6 208 aa19.44■□□□□ 0.7
CCDC28B-201ENST00000373602 GPC6Q9Y625 555 aaPredicted RBP19.44■□□□□ 0.7
CCDC28B-201ENST00000373602 PRRC2AP48634 2157 aaKnown RBP19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 A0A1W2PPR1 153 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 EFNA2O43921 213 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 SS18L1O75177 396 aaPredicted RBP19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 NUDT14O95848 222 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 RAF1P04049 648 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 UQCRC2P22695 453 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 SHC1P29353 583 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 CCKARP32238 428 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 KCNJ5P48544 419 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 CASP8Q14790 479 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 TOMM34Q15785 309 aaPredicted RBP19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 DPY19L1Q2PZI1 675 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 NDUFAF6Q330K2 333 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 ARHGAP11BQ3KRB8 267 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 SPANXN4Q5MJ08 99 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 FBXO27Q8NI29 283 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 OSTF1Q92882 214 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 ARSGQ96EG1 525 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 OR51I1Q9H343 314 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 PLSCR4Q9NRQ2 329 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 GLRX2Q9NS18 164 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 KCNE5Q9UJ90 142 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 CLEC4AQ9UMR7 237 aa19.43■□□□□ 0.7
CCDC28B-201ENST00000373602 CELSR1Q9NYQ6 3014 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 TMEM120BA0PK00 339 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 C16orf97H3BN30 126 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 SDHDO14521 159 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 ZNF195O14628 629 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 ZNF264O43296 627 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 EIF4E2O60573 245 aaKnown RBP19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 STX11O75558 287 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 ATE1O95260 518 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 NTN1O95631 604 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 CPSF4O95639 269 aaKnown RBP19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 PLGP00747 810 aaPredicted RBP19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 PRKCAP17252 672 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 SFTPDP35247 375 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 CTBP2P56545 445 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 GPR68Q15743 365 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 ZNF141Q15928 474 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 PDZK1Q5T2W1 519 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 HEPHL1Q6MZM0 1159 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 OR5W2Q8NH69 310 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 MRGPRX4Q96LA9 322 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 ALPK1Q96QP1 1244 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 ZNF350Q9GZX5 532 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 EXD2Q9NVH0 621 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 KLHL28Q9NXS3 571 aa19.42■□□□□ 0.7
CCDC28B-201ENST00000373602 SERINC4A6NH21 518 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 E9PBE3 544 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 FCMRO60667 390 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 SNNO75324 88 aaPredicted RBP19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 GUSBP08236 651 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 ALDOCP09972 364 aaKnown RBP19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 UBL4AP11441 157 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 NID1P14543 1247 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 SLC18A1P54219 525 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 CARD18P57730 90 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 SLC25A53Q5H9E4 307 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 C16orf62Q7Z3J2 963 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 TOR1AIP2Q8NFQ8 470 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 ZNF524Q96C55 264 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 MED18Q9BUE0 208 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 LAT2Q9GZY6 243 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 THAP1Q9NVV9 213 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 ZNF226Q9NYT6 803 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 MKLN1Q9UL63 735 aa19.41■□□□□ 0.7
CCDC28B-201ENST00000373602 HRNRQ86YZ3 2850 aaPredicted RBP19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 GJE1A6NN92 205 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 DEFB108AA8MXU0 73 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 ETV2O00321 342 aaPredicted RBP19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 SIAH2O43255 324 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 UGT2B17O75795 530 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 AGR2O95994 175 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 OR12D1P0DN82 309 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 CRYGSP22914 178 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 S100A3P33764 101 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 CASP9P55211 416 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 KEAP1Q14145 624 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 FAM174BQ3ZCQ3 159 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 AP1ARQ63HQ0 302 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 SAXO2Q658L1 398 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 GTF2IRD2BQ6EKJ0 949 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 OLIG3Q7RTU3 272 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 GTF2IRD2Q86UP8 949 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 TMCO5AQ8N6Q1 288 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 RFWD2Q8NHY2 731 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 NEURL3Q96EH8 262 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 TEX37Q96LM6 180 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 CCDC115Q96NT0 180 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 TIGARQ9NQ88 270 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 AIG1Q9NVV5 245 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 C6orf203Q9P0P8 240 aaPredicted RBP19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 BTNL2Q9UIR0 455 aa19.4■□□□□ 0.7
CCDC28B-201ENST00000373602 UQCRHLA0A096LP55 91 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 CENPVL1A0A0U1RR11 272 aa19.39■□□□□ 0.69
CCDC28B-201ENST00000373602 HDAC3O15379 428 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms