RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 GALNT11Q8NCW6 608 aa11.02□□□□□ -0.64
COL9A1-202ENST00000357250 RHOXF1Q8NHV9 184 aa11.02□□□□□ -0.64
COL9A1-202ENST00000357250 BRIX1Q8TDN6 353 aaKnown RBP11.02□□□□□ -0.64
COL9A1-202ENST00000357250 SPRYD4Q8WW59 207 aaPredicted RBP11.02□□□□□ -0.64
COL9A1-202ENST00000357250 MSANTD3Q96H12 275 aa11.02□□□□□ -0.64
COL9A1-202ENST00000357250 ANKRD19PQ9H560 264 aa11.02□□□□□ -0.64
COL9A1-202ENST00000357250 KCNS2Q9ULS6 477 aa11.02□□□□□ -0.64
COL9A1-202ENST00000357250 ZNF443Q9Y2A4 671 aaPredicted RBP11.02□□□□□ -0.64
COL9A1-202ENST00000357250 TRIM64A6NGJ6 449 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 GFRA2O00451 464 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 FCER2P06734 321 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 TMEM225BP0DP42 221 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 RAB3AP20336 220 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 GRPRP30550 384 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 UBE2NP61088 152 aaKnown RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 CSNK2A1P68400 391 aaPredicted RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 PCGF3Q3KNV8 242 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 CCDC58Q4VC31 144 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 KIAA1211LQ6NV74 962 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 TMEM53Q6P2H8 277 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 ELMOD2Q8IZ81 293 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 MUL1Q969V5 352 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 ZNF578Q96N58 590 aaPredicted RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 OR7D2Q96RA2 312 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 OLAHQ9NV23 265 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 NAALAD2Q9Y3Q0 740 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 CSNK1G3Q9Y6M4 447 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 V9GY05 133 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 PPP6CO00743 305 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 P2RX6O15547 441 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 C1SP09871 688 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 EMP2P54851 167 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 EIF2B1Q14232 305 aaKnown RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 PPA1Q15181 289 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 SLC5A12Q1EHB4 618 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 EIF2S3LQ2VIR3 472 aaKnown RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 C3orf38Q5JPI3 329 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 ATAD3CQ5T2N8 411 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 RPL22L1Q6P5R6 122 aaKnown RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 USP53Q70EK8 1073 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 B3GNT8Q7Z7M8 397 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 PLPP6Q8IY26 295 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 SLC35F3Q8IY50 421 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 GTPBP8Q8N3Z3 284 aaPredicted RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 DEDD2Q8WXF8 326 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 ZMYND19Q96E35 227 aaPredicted RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 RTP3Q9BQQ7 232 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 DNTTIP1Q9H147 329 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 OR51E2Q9H255 320 aa11.02□□□□□ -0.65
COL9A1-202ENST00000357250 ARID1BQ8NFD5 2236 aaPredicted RBP11.02□□□□□ -0.65
COL9A1-202ENST00000357250 F5H5P2 479 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 CEBPBP17676 345 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 NOXA1Q86UR1 476 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 OR9A4Q8NGU2 314 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 THAP3Q8WTV1 239 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 C16orf58Q96GQ5 468 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 TREX2Q9BQ50 279 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 THAP7Q9BT49 309 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 DUSP23Q9BVJ7 150 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 ZNF736B4DX44 427 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 FOXD2O60548 495 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 GALR3O60755 368 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 RDH16O75452 317 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 RFPL3O75679 317 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 SLC22A5O76082 557 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 SORBS2O94875 1100 aaKnown RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 TOXO94900 526 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 CDK4P11802 303 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 RPS5P46782 204 aaKnown RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 LSSP48449 732 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 SGSHP51688 502 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 DLX5P56178 289 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 HBA1P69905 142 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 TP53I3Q53FA7 332 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 C6orf132Q5T0Z8 1188 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 HES5Q5TA89 166 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 TMEM184AQ6ZMB5 413 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 MFSD6LQ8IWD5 586 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 SGPP2Q8IWX5 399 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 OR5D14Q8NGL3 314 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 PHYHIPQ92561 330 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 NAT6Q93015 286 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 ZNF583Q96ND8 569 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 CRB3Q9BUF7 120 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 TEX10Q9NXF1 929 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 MOKQ9UQ07 419 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 A3GALT2U3KPV4 340 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 PHIPQ8WWQ0 1821 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 PRSS38A1L453 326 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 KRBA1A5PL33 1030 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 OR52A4PA6NMU1 304 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 GABRB3P28472 473 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 ZNF91Q05481 1191 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 EEF1A1P5Q5VTE0 462 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 ABHD12BQ7Z5M8 362 aaPredicted RBP11.01□□□□□ -0.65
COL9A1-202ENST00000357250 CMTM1Q8IZ96 169 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 GGHQ92820 318 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 ARL11Q969Q4 196 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 LOC102725191A0A1B0GVB3 256 aa11.01□□□□□ -0.65
COL9A1-202ENST00000357250 HLA-FP30511 346 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms