RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 NFAM1Q8NET5 270 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 OR2L5Q8NG80 312 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 OR5AK3PQ8NH89 298 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ATL1Q8WXF7 558 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 NEIL1Q96FI4 390 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 TMEM19Q96HH6 336 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 PGLYRP3Q96LB9 341 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ZNF354BQ96LW1 612 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 FEVQ99581 238 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SEPHS2Q99611 448 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 WDR77Q9BQA1 342 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 NEURL2Q9BR09 285 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SLC35A5Q9BS91 424 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SSBP3Q9BWW4 388 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 DPY30Q9C005 99 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 SLC6A15Q9H2J7 730 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 NMNAT1Q9HAN9 279 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 PROK2Q9HC23 129 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 C20orf141Q9NUB4 165 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 THUMPD1Q9NXG2 353 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 ETAA1Q9NY74 926 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 DEC1Q9P2X7 70 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 PLEKHB1Q9UF11 243 aaPredicted RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 GMEB2Q9UKD1 530 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 POMT2Q9UKY4 750 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 MKLN1Q9UL63 735 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 ACSL5Q9ULC5 683 aa2.12□□□□□ -2.07
VPS54-202ENST00000354504 WBP11Q9Y2W2 641 aaKnown RBP2.12□□□□□ -2.07
VPS54-202ENST00000354504 IGLV3-12A0A075B6K2 115 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 H3BQ06 376 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 hCG_2039718K7EN88 272 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RFXANKO14593 260 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SURF4O15260 269 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MAGEB3O15480 346 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PLOD3O60568 738 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GALR3O60755 368 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 NPIPB7O75200 414 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GPX5O75715 221 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 DDAH2O95865 285 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CST1P01037 141 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 IGF2P01344 180 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MT-ND2P03891 347 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GRPP07492 148 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LIMS3P0CW19 117 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LIMS4P0CW20 117 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SPNP16150 400 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 NR4A1P22736 598 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KELP23276 732 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PSMA4P25789 261 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 GDI1P31150 447 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RRM2P31350 389 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 BTCP35070 178 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GZMKP49863 264 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CCR3P51677 355 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 BMXP51813 675 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 HSD11B2P80365 405 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MXRA7P84157 204 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TNFRSF17Q02223 184 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FUT7Q11130 342 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TUBA3CQ13748 450 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 STARD3Q14849 445 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OXA1LQ15070 435 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TBCEQ15813 527 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 KIF19Q2TAC6 998 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TRMT12Q53H54 448 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 TMEM236Q5W0B7 351 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LCN10Q6JVE6 187 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MFSD12Q6NUT3 480 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KLHL35Q6PF15 583 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZNF836Q6ZNA1 936 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TMEM91Q6ZNR0 172 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZBTB49Q6ZSB9 765 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PXKQ7Z7A4 578 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CCDC190Q86UF4 302 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 AMZ2Q86W34 360 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CCDC28AQ8IWP9 274 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TMEM132CQ8N3T6 1108 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SLC38A9Q8NBW4 561 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ICA1LQ8NDH6 482 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CATSPER1Q8NEC5 780 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR5T3Q8NGG3 340 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RPLP0P6Q8NHW5 317 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FBXO30Q8TB52 745 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CPT1CQ8TCG5 803 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PNPT1Q8TCS8 783 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 PTPMT1Q8WUK0 201 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 SKA2Q8WVK7 121 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZFPM2Q8WW38 1151 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR5P2Q8WZ92 322 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KLK6Q92876 244 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 UBE2E3Q969T4 207 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CYYR1Q96J86 154 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RNF145Q96MT1 663 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SLC46A1Q96NT5 459 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR7D2Q96RA2 312 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR5M11Q96RB7 305 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LMF1Q96S06 567 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RBM4BQ9BQ04 359 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 RBM4Q9BWF3 364 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 DSN1Q9H410 356 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms