RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 MAP2K5Q13163 448 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 NCBP2-AS2Q69YL0 99 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 GPSM3Q9Y4H4 160 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 FOXO1Q12778 655 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 MALLQ13021 153 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 ARHGAP11BQ3KRB8 267 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 LYPD4Q6UWN0 246 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 TCTEX1D1Q8N7M0 179 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 EDAQ92838 391 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 ZNF300Q96RE9 604 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-203ENST00000353578 CABLES2Q9BTV7 478 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 TMEM129A0AVI4 362 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 LNP1A1A4G5 178 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 BLACEA4D250 179 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 NUDT21O43809 227 aaKnown RBP11.9□□□□□ -0.5
COL6A3-203ENST00000353578 ADORA3P0DMS8 318 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 MLLT10P55197 1068 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 DCBLD1Q8N8Z6 715 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 SUMF1Q8NBK3 374 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 UBAC2Q8NBM4 344 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 BET1LQ9NYM9 111 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 FOXD2O60548 495 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-203ENST00000353578 ATP1B1P05026 303 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 COX19Q49B96 90 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 PPTC7Q8NI37 304 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 MAP6Q96JE9 813 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 NXF2Q9GZY0 626 aaKnown RBP11.9□□□□□ -0.5
COL6A3-203ENST00000353578 SMOC2Q9H3U7 446 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 DNAJC5Q9H3Z4 198 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 MMP26Q9NRE1 261 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 CENPMQ9NSP4 180 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 PCDHAC2Q9Y5I4 1007 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 PTBP3O95758 552 aaKnown RBP11.9□□□□□ -0.5
COL6A3-203ENST00000353578 C6orf47O95873 294 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 HPNP05981 417 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 UEVLDQ8IX04 471 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 BRI3BPQ8WY22 251 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 TRAF4Q9BUZ4 470 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-203ENST00000353578 KCMF1Q9P0J7 381 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 STYXL1Q9Y6J8 313 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 NPIPA2E9PIF3 369 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 CH25HO95992 272 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 MT-CYBP00156 380 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-203ENST00000353578 HLA-DQB2P05538 268 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 LAX1Q8IWV1 398 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 C16orf78Q8WTQ4 265 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 PSORS1C1Q9UIG5 152 aa11.9□□□□□ -0.5
COL6A3-203ENST00000353578 SPATA31A3Q5VYP0 1347 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 LOC102723532A0A0G2JNH3 316 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 SMIM35A0A1B0GVV1 85 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 NSA2O95478 260 aaKnown RBP11.9□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF133P52736 654 aaPredicted RBP11.9□□□□□ -0.51
COL6A3-203ENST00000353578 CRYBB1P53674 252 aaPredicted RBP11.9□□□□□ -0.51
COL6A3-203ENST00000353578 OR4D2P58180 307 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 CLRN1P58418 232 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 HSD17B13Q7Z5P4 300 aaPredicted RBP11.9□□□□□ -0.51
COL6A3-203ENST00000353578 MARVELD3Q96A59 401 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 WFIKKN1Q96NZ8 548 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 SLC2A13Q96QE2 648 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 OR51I2Q9H344 312 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 NDUFB11Q9NX14 153 aa11.9□□□□□ -0.51
COL6A3-203ENST00000353578 TGM1P22735 817 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 BLKP51451 505 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 MRPS6P82932 125 aaKnown RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 OR4K5Q8NGD3 323 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 OR6N2Q8NGY6 317 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 DGAT2Q96PD7 388 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 STRA6Q9BX79 667 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 AKIP1Q9NQ31 210 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 BABAM2Q9NXR7 383 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 BACE2Q9Y5Z0 518 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 POM121CA8CG34 1229 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 CD300LBA8K4G0 201 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 KDELR3O43731 214 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 PDLIM3Q53GG5 364 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 MDGA2Q7Z553 956 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SLC5A8Q8N695 610 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 ZBTB45Q96K62 511 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 TIMM8BQ9Y5J9 83 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 LRRC37A3O60309 1634 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 TACR3P29371 465 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 ACVR1BP36896 505 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 PSMD8P48556 350 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SRP9P49458 86 aaKnown RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 MEP1BQ16820 701 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SLC35F2Q8IXU6 374 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SPTSSAQ969W0 71 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 NUDT9Q9BW91 350 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 CDCA4Q9BXL8 241 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 CRABP1P29762 137 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 GPLD1P80108 840 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 OR9K2Q8NGE7 335 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SLC12A9Q9BXP2 914 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 ANKRD19PQ9H560 264 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 HSPB2A8KAH6 182 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF16P17020 682 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-203ENST00000353578 HSPB2Q16082 182 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SLC8B1Q6J4K2 584 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SBSNQ6UWP8 590 aa11.89□□□□□ -0.51
COL6A3-203ENST00000353578 SPACA7Q96KW9 195 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms