RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CD70P32970 193 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SMAD3P84022 425 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 MAT1AQ00266 395 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 FGL1Q08830 312 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 LMAN2Q12907 356 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 FAM110CQ1W6H9 321 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 TMEM44Q2T9K0 475 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 HFEQ30201 348 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ZNF805Q5CZA5 627 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 IGSF11Q5DX21 431 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ELFN2Q5R3F8 820 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 FAM69AQ5T7M9 428 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ZNF626Q68DY1 528 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OR7E24Q6IFN5 339 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 NXPE4Q6UWF7 544 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 GSG1LQ6UXU4 331 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 APOOLQ6UXV4 268 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 Q6ZVL8 140 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 TMEM173Q86WV6 379 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 CDH26Q8IXH8 852 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OR10H4Q8NGA5 316 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OR5M1Q8NGP8 315 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 BBS10Q8TAM1 723 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PIGXQ8TBF5 258 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 GANCQ8TET4 914 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OSTF1Q92882 214 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ZG16BQ96DA0 208 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ELP4Q96EB1 424 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SLC35G5Q96KT7 338 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SAMD8Q96LT4 415 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SEMA4CQ9C0C4 833 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ENKD1Q9H0I2 346 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PLEKHA1Q9HB21 404 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 NOX3Q9HBY0 568 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 KLK11Q9UBX7 282 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OPN4Q9UHM6 478 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 MRTO4Q9UKD2 239 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 KCNK7Q9Y2U2 307 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 Q9Y3F1 56 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 DYRK1BQ9Y463 629 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 KCNE3Q9Y6H6 103 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 DAPL1A0PJW8 107 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 PRR23D1E9PI22 279 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 F8W036 122 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 SPDEFO95238 335 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ASGR2P07307 311 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 MRPL3P09001 348 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 PRR23D2P0DMB1 279 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 PTHLHP12272 177 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 FUT1P19526 365 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 BSGP35613 385 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 GCGRP47871 477 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 GATMP50440 423 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 OR12D2P58182 307 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 FXYD6P3P58550 94 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 IRF5Q13568 498 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 SERTAD2Q14140 314 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 FGL2Q14314 439 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 TRAM2Q15035 370 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 LTB4RQ15722 352 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 STPG1Q5TH74 334 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ZDHHC20Q5W0Z9 365 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 HEPHL1Q6MZM0 1159 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ZC3H14Q6PJT7 736 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 LINGO2Q7L985 606 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 NRMQ8IXM6 262 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 PM20D2Q8IYS1 436 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 OR6V1Q8N148 313 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 RFLNBQ8N5W9 214 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 MEIOBQ8N635 442 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 OR5T2Q8NGG2 359 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 OR5J2Q8NH18 312 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 OR8K3Q8NH51 312 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 GHSRQ92847 366 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 PNPLA2Q96AD5 504 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 C4orf36Q96KX1 117 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 DERL3Q96Q80 235 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 F2RL3Q96RI0 385 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 NRTNQ99748 197 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 FAM83CQ9BQN1 747 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 NKX6-2Q9C056 277 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 UBQLN3Q9H347 655 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ZDHHC6Q9H6R6 413 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 BCL2L10Q9HD36 194 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 LHX9Q9NQ69 397 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 MRPL17Q9NRX2 175 aaKnown RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 TAS2R5Q9NYW4 299 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ACTR10Q9NZ32 417 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 H2AFY2Q9P0M6 372 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 FBXL3Q9UKT7 428 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ERVK-19Q9WJR5 959 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 COLQQ9Y215 455 aaPredicted RBP6.31□□□□□ -1.4
VPS39-202ENST00000348544 SLC6A5Q9Y345 797 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 BRCA2P51587 3418 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 DENND4AQ7Z401 1863 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 FXYD6-FXYD2A0A087WZ82 144 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 ARPC4-TTLL3A0A0A6YYG9 625 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 CDHR4A6H8M9 788 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 HMSDA8MTL9 139 aa6.31□□□□□ -1.4
VPS39-202ENST00000348544 J3QLW9 94 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms