RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SEC24DO94855 1032 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 UBL3O95164 117 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 HPXP02790 462 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SOD3P08294 240 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR56A5P0C7T3 313 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 NR2C1P13056 603 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SELLP14151 372 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ITIH2P19823 946 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 RPS4Y1P22090 263 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GPX3P22352 226 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OTX2P32243 289 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ACVRL1P37023 503 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MDH2P40926 338 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ERFP50548 548 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 NEK4P51957 841 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ELLP55199 621 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CAV3P56539 151 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 HIST1H3AP68431 136 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PITX1P78337 314 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CCT2P78371 535 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CCZ1BP86790 482 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CCZ1P86791 482 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SLC25A11Q02978 314 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MGAT2Q10469 447 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 NFYCQ13952 458 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 NFE2L1Q14494 772 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 LSM12Q3MHD2 195 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ACCSLQ4AC99 568 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ANKRD20A4Q4UJ75 823 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 EARS2Q5JPH6 523 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ANKRD20A2Q5SQ80 823 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PHYHD1Q5SRE7 291 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 HIST2H3PS2Q5TEC6 136 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ANKRD20A1Q5TYW2 823 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ANKRD20A3Q5VUR7 823 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 LETMD1Q6P1Q0 360 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 DCDC5Q6ZRR9 648 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 HIST2H3AQ71DI3 136 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MARK2Q7KZI7 788 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF572Q7Z3I7 529 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TTC7BQ86TV6 843 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 THOC6Q86W42 341 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SLC44A2Q8IWA5 706 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 DEFB106AQ8N104 65 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 AGGF1Q8N302 714 aaeCLIP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CSNK1A1LQ8N752 337 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 Q8N9G6 341 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SCAIQ8N9R8 606 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 FAM83FQ8NEG4 500 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR2V1Q8NHB1 315 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CLDND2Q8NHS1 167 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GIMAP7Q8NHV1 300 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 B4GALNT2Q8NHY0 566 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF519Q8TB69 540 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF606Q8WXB4 792 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 KCNJ9Q92806 393 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 BCL2L2Q92843 193 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CREB3L1Q96BA8 519 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF48Q96MX3 618 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 C18orf15Q96N68 181 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF583Q96ND8 569 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 DNAJC7Q99615 494 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CLSTN2Q9H4D0 955 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ANKHQ9HCJ1 492 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ATAD3AQ9NVI7 634 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TRIM10Q9UDY6 481 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 OR12D3Q9UGF7 316 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TP53TG3Q9ULZ0 132 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SYNE2Q8WXH0 6885 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 IGHV4-61A0A0C4DH41 118 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GLYATL1P3A0A0U1RQE8 302 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 A0A1W2PP18 115 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SYCE3A1L190 88 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TMEM191CA6NGB0 347 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PDZK1P1A8MUH7 402 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CCSO14618 274 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CLIC2O15247 247 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 MAGEB3O15480 346 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PJA2O43164 708 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 HSPA12AO43301 675 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 GADD45BO75293 160 aaPredicted RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 DEDDO75618 318 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 NEBLO76041 1014 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 SEC31AO94979 1220 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CLIC3O95833 236 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 PDYNP01213 254 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CD5P06127 495 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CELA3BP08861 270 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 RPS2P15880 293 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 EPORP19235 508 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CD22P20273 847 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ACAT1P24752 427 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 NMT1P30419 496 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 TRPC1P48995 793 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 THBS3P49746 956 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 CCNG1P51959 295 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ZNF137PP52743 207 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 DRG2P55039 364 aaKnown RBP1.27□□□□□ -2.21
LINC00643-201ENST00000334389 ACTG1P63261 375 aa1.27□□□□□ -2.21
LINC00643-201ENST00000334389 RGS1Q08116 209 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms