RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TM4SF18Q96CE8 201 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 DERL3Q96Q80 235 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 RIOK2Q9BVS4 552 aaKnown RBP12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 SLC6A15Q9H2J7 730 aa12.52□□□□□ -0.4
CCDC88C-201ENST00000331194 GALR3O60755 368 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 SDC3O75056 442 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 FGF18O76093 207 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 RLN2P04090 185 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 HOXB1P14653 301 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 GSTM3P21266 225 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 CLDN12P56749 244 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 LMAN2Q12907 356 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC6A19Q695T7 634 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF704Q6ZNC4 412 aaPredicted RBP12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 CXXC5Q7LFL8 322 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 RFLNBQ8N5W9 214 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 SCARB1Q8WTV0 552 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 C16orf58Q96GQ5 468 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 NARS2Q96I59 477 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 ADAT1Q9BUB4 502 aaKnown RBP12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 OR51V1Q9H2C8 321 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 NOX3Q9HBY0 568 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 GLS2Q9UI32 602 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 FBXL4Q9UKA2 621 aa12.52□□□□□ -0.41
CCDC88C-201ENST00000331194 A0A1W2PS29 197 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 OR6C74A6NCV1 312 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SOCS5O75159 536 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 INHAP05111 366 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 GAAP10253 952 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 HMGA1P17096 107 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 PAICSP22234 425 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 MST1P26927 711 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ADH7P40394 386 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 FUT5Q11128 374 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 STPG1Q5TH74 334 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 CORO6Q6QEF8 472 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SLITRK4Q8IW52 837 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 CMTM4Q8IZR5 234 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 HDDC3Q8N4P3 179 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 OR5J2Q8NH18 312 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 LGALS14Q8TCE9 139 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 TMEM255BQ8WV15 326 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 LINC01599Q8WXQ3 324 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 OR5P2Q8WZ92 322 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC25A28Q96A46 364 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 C4orf36Q96KX1 117 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 PELOQ9BRX2 385 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC6A20Q9NP91 592 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 WSB2Q9NYS7 404 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 NFKBIL1Q9UBC1 381 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ZMIZ1Q9ULJ6 1067 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 DYRK1BQ9Y463 629 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 FEZF1A0PJY2 475 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 TUBAL3A6NHL2 446 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 D6RAR5 112 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 FOXE1O00358 373 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 RP2O75695 350 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 GYPBP06028 91 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 GABRA1P14867 456 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 OR1D2P34982 312 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SEC61A1P61619 476 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 LASP1Q14847 261 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 RPE65Q16518 533 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 PGGHGQ32M88 737 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 LINC00303Q3SY05 128 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 PDSS1Q5T2R2 415 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 IKBIPQ70UQ0 350 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC9B2Q86UD5 537 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 LRRC56Q8IYG6 542 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF671Q8TAW3 534 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF296Q8WUU4 475 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 GHSRQ92847 366 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 KCTD12Q96CX2 325 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SCLYQ96I15 445 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 GINS4Q9BRT9 223 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 MTG2Q9H4K7 406 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ZCCHC3Q9NUD5 404 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 P2RX2Q9UBL9 471 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ICKQ9UPZ9 632 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 F8W036 122 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 J3QRE1 110 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 FMO6PO60774 539 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 PQBP1O60828 265 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 PYCR1P32322 319 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 RPL3P39023 403 aaKnown RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 CAPZA2P47755 286 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 AKR1C2P52895 323 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 H2BFSP57053 126 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 AKR1C1Q04828 323 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SERTAD2Q14140 314 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 FAM26DQ5JW98 314 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 SLC22A10Q63ZE4 541 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ZNF660Q6AZW8 331 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ELP2Q6IA86 826 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 CDC73Q6P1J9 531 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 PDZD9Q8IXQ8 264 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 CMIPQ8IY22 773 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 CFAP206Q8IYR0 622 aa12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 ARL14EPQ8N8R7 260 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-201ENST00000331194 LRIG1Q96JA1 1093 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms