RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 COMMD4Q9H0A8 199 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 RIBC2Q9H4K1 309 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 MEPEQ9NQ76 525 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-201ENST00000326004 RBM28Q9NW13 759 aaKnown RBP2.49□□□□□ -2.01
HMGB1-201ENST00000326004 SLC2A6Q9UGQ3 507 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 LAMP5Q9UJQ1 280 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 HPCAL4Q9UM19 191 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 RNF6Q9Y252 685 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 KIF3AQ9Y496 699 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 GMPPBQ9Y5P6 360 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 ADGRL3Q9HAR2 1447 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 CNTNAP1P78357 1384 aa2.49□□□□□ -2.01
HMGB1-201ENST00000326004 CUL9Q8IWT3 2517 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 MEGF6O75095 1541 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 NEXMIFQ5QGS0 1516 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CROCC2H7BZ55 1655 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 LRRC30A6NM36 301 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CASKO14936 926 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CHADO15335 359 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 NUDT21O43809 227 aaKnown RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 OPN1MWP04001 364 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CA3P07451 260 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 GIG44P09565 113 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 OPN1MW2P0DN77 364 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 OPN1MW3P0DN78 364 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CYP2F1P24903 491 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 PBLDP30039 288 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 GBX2P52951 348 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 PLOD1Q02809 727 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 GLYR1Q49A26 553 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 PRR30Q53SZ7 412 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 SULT1C3Q6IMI6 304 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 SLC39A4Q6P5W5 647 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 STAC2Q6ZMT1 411 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 IFNEQ86WN2 208 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 ZNF573Q86YE8 665 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CBWD2Q8IUF1 395 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 C9orf40Q8IXQ3 194 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 EFCAB13Q8IY85 973 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 MCOLN2Q8IZK6 566 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 GCNT2Q8N0V5 402 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CADM2Q8N3J6 435 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 BPIFB2Q8N4F0 458 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 STKLD1Q8NE28 680 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 OR5AU1Q8NGC0 362 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 OR2T34Q8NGX1 318 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CCDC26Q8TAB7 109 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 FAF2Q96CS3 445 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 TPPP3Q9BW30 176 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 TM2D1Q9BX74 207 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 CHMP4BQ9H444 224 aaKnown RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 IKZF5Q9H5V7 419 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 GPN2Q9H9Y4 310 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 ZNF275Q9NSD4 429 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 VNN3Q9NY84 501 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 Q9UF83 564 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 AP4B1Q9Y6B7 739 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 DCCP43146 1447 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 PLXNC1O60486 1568 aa2.48□□□□□ -2.01
HMGB1-201ENST00000326004 TDRD6O60522 2096 aaKnown RBP2.48□□□□□ -2.01
HMGB1-201ENST00000326004 SYCP2Q9BX26 1530 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 ADAMTS7Q9UKP4 1686 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 ERVK-7P63135 1459 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 FYCO1Q9BQS8 1478 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 USP32Q8NFA0 1604 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 A0A0U1RQV5 110 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 GMFGO60234 142 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 TRIM3O75382 744 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-201ENST00000326004 SPAG6O75602 509 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 PALMO75781 387 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 ANP32DO95626 131 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 PCCBP05166 539 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 KRT8P05787 483 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 TNNI3P19429 210 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 PAICSP22234 425 aaKnown RBP2.47□□□□□ -2.01
HMGB1-201ENST00000326004 HNRNPA2B1P22626 353 aaKnown RBP2.47□□□□□ -2.01
HMGB1-201ENST00000326004 PSMA5P28066 241 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CDH5P33151 784 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-201ENST00000326004 NF2P35240 595 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 PTGFRP43088 359 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 TDO2P48775 406 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 ERVPABLB-1P60509 514 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 RND3P61587 244 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 IGLV3-21P80748 117 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CHIT1Q13231 466 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 TEX44Q53QW1 395 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 ZNF311Q5JNZ3 666 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 FHL5Q5TD97 284 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 NIPAL3Q6P499 406 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CES3Q6UWW8 571 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CENPUQ71F23 418 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 LRRC70Q7Z2Q7 622 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 HSD11B1LQ7Z5J1 315 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 APOBEC3FQ8IUX4 373 aaKnown RBP2.47□□□□□ -2.01
HMGB1-201ENST00000326004 ZNF584Q8IVC4 421 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 CSNK1A1LQ8N752 337 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 FAM133AQ8N9E0 248 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 OR52M1Q8NGK5 317 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 OR13F1Q8NGS4 319 aa2.47□□□□□ -2.01
HMGB1-201ENST00000326004 TMEM80Q96HE8 168 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms