RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SYT3Q9BQG1 590 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ZNF559Q9BR84 538 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 SLC17A9Q9BYT1 436 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 DDX31Q9H8H2 851 aaKnown RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 PGAP2Q9UHJ9 254 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 UBE2J1Q9Y385 318 aaPredicted RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 BCORQ6W2J9 1755 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 FADS1O60427 444 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ATXN1LP0C7T5 689 aaKnown RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 GAAP10253 952 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 M6PRP20645 277 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 CAV3P56539 151 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 IL13RA1P78552 427 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 CDC20Q12834 499 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 FAM26DQ5JW98 314 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 IDO2Q6ZQW0 420 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 DEFB119Q8N690 84 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 PXT1Q8NFP0 134 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ZFAND1Q8TCF1 268 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ZNF587Q96SQ5 575 aaPredicted RBP10.82□□□□□ -0.68
VPS39-201ENST00000318006 DHRS9Q9BPW9 319 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 INPP5EQ9NRR6 644 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 ABI3Q9P2A4 366 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 OSGIN1Q9UJX0 560 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 OR1A2Q9Y585 309 aa10.82□□□□□ -0.68
VPS39-201ENST00000318006 OR2A25A4D2G3 310 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 FZD7O75084 574 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 CSNK1DP48730 415 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 NKX3-2P78367 333 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 MBTPS1Q14703 1052 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 Q6ZPB1 254 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 TRIM46Q7Z4K8 759 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 LAS2Q8IYD9 372 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 LRRC25Q8N386 305 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 NAXEQ8NCW5 288 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 KLHDC9Q8NEP7 349 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 OR2T11Q8NH01 316 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 KHSRPQ92945 711 aaKnown RBP eCLIP10.81□□□□□ -0.685e-6■□□□□ 8.2
VPS39-201ENST00000318006 ZNF583Q96ND8 569 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 OR8D2Q9GZM6 311 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 C19orf12Q9NSK7 152 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 V9GY05 133 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 DOCK2Q92608 1830 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 GGT3PA6NGU5 568 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 SMLR1H3BR10 107 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 KCNJ13O60928 360 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 RDH16O75452 317 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 DIRAS3O95661 229 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 RAB40ALP0C0E4 278 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 PIM1P11309 404 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 NUDT1P36639 197 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 LIPAP38571 399 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 RPS15AP62244 130 aaKnown RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 MLIPQ5VWP3 458 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 TSSK4Q6SA08 328 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 LRRC56Q8IYG6 542 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 STEAP2Q8NFT2 490 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 GPR148Q8TDV2 347 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 RAB40AQ8WXH6 277 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 PNPLA2Q96AD5 504 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 FYTTD1Q96QD9 318 aaKnown RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 ATOH8Q96SQ7 321 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 DNTTIP1Q9H147 329 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 MTHFD2LQ9H903 347 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 FAM230AA0A1W2PPH8 454 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 OR7A17O14581 309 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 TCRBP04435 133 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 CA3P07451 260 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 S100A11P31949 105 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 IRF4Q15306 451 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 AAK1Q2M2I8 961 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 LRIF1Q5T3J3 769 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 HBMQ6B0K9 141 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 OR4C11Q6IEV9 310 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 SLC51BQ86UW2 128 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 CCDC71Q8IV32 467 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 MMABQ96EY8 250 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 LIN37Q96GY3 246 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 PKMYT1Q99640 499 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 BRF2Q9HAW0 419 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 PRTFDC1Q9NRG1 225 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 ZNF223Q9UK11 482 aaPredicted RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 USP22Q9UPT9 525 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 DDX60LQ5H9U9 1706 aaKnown RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 CASC3O15234 703 aaKnown RBP10.81□□□□□ -0.68
VPS39-201ENST00000318006 PPP1R3DO95685 299 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 HLA-DMAP28067 261 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 BTG1P62324 171 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 HMGN3Q15651 99 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 STK11Q15831 433 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 OR2G6Q5TZ20 316 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 CD276Q5ZPR3 534 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 SLC18B1Q6NT16 456 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 LEG1Q6P5S2 330 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 HSD11B1LQ7Z5J1 315 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 ST7LQ8TDW4 575 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 NTMT1Q9BV86 223 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 NELFAQ9H3P2 528 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 KLHL42Q9P2K6 505 aa10.81□□□□□ -0.68
VPS39-201ENST00000318006 A0A1W2PS29 197 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms