RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 REXO5Q96IC2 774 aaKnown RBP17.47■□□□□ 0.39
LIME1-201ENST00000309546 SORT1Q99523 831 aa17.47■□□□□ 0.39
LIME1-201ENST00000309546 PAIP2Q9BPZ3 127 aaKnown RBP17.47■□□□□ 0.39
LIME1-201ENST00000309546 NUF2Q9BZD4 464 aa17.47■□□□□ 0.39
LIME1-201ENST00000309546 DPY30Q9C005 99 aa17.47■□□□□ 0.39
LIME1-201ENST00000309546 SERHL2Q9H4I8 314 aa17.47■□□□□ 0.39
LIME1-201ENST00000309546 C12orf49Q9H741 205 aa17.47■□□□□ 0.39
LIME1-201ENST00000309546 ICAM5Q9UMF0 924 aa17.47■□□□□ 0.39
LIME1-201ENST00000309546 PCDHGB4Q9UN71 923 aa17.47■□□□□ 0.39
LIME1-201ENST00000309546 DTNAQ9Y4J8 743 aa17.47■□□□□ 0.39
LIME1-201ENST00000309546 ZNF469Q96JG9 3925 aaPredicted RBP17.47■□□□□ 0.39
LIME1-201ENST00000309546 DEFB108AA8MXU0 73 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 RNASET2O00584 256 aaKnown RBP17.46■□□□□ 0.39
LIME1-201ENST00000309546 CPSF4O95639 269 aaKnown RBP17.46■□□□□ 0.39
LIME1-201ENST00000309546 DHRS4L1P0CG22 281 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 UBL4AP11441 157 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 CD53P19397 219 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 ELK4P28324 431 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 SUMO3P55854 103 aaPredicted RBP17.46■□□□□ 0.39
LIME1-201ENST00000309546 CARD18P57730 90 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 ADAM8P78325 824 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 GPR68Q15743 365 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 TOMM34Q15785 309 aaPredicted RBP17.46■□□□□ 0.39
LIME1-201ENST00000309546 PDZK1Q5T2W1 519 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 OLIG3Q7RTU3 272 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 ROBO4Q8WZ75 1007 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 SDF2Q99470 211 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 UBTD1Q9HAC8 227 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.46■□□□□ 0.39
LIME1-201ENST00000309546 GPC6Q9Y625 555 aaPredicted RBP17.46■□□□□ 0.39
LIME1-201ENST00000309546 HEATR5AQ86XA9 2040 aa17.46■□□□□ 0.39
LIME1-201ENST00000309546 NPIPB9F8W1W9 429 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 ZNF195O14628 629 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 ZNF264O43296 627 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 CYP7B1O75881 506 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 TUBBP07437 444 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 PRKCAP17252 672 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 STX3Q13277 289 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 ZNF239Q16600 458 aaKnown RBP17.45■□□□□ 0.38
LIME1-201ENST00000309546 C16orf62Q7Z3J2 963 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 ANKRD42Q8N9B4 389 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 TOR1AIP2Q8NFQ8 470 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 GPR119Q8TDV5 335 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 SRXN1Q9BYN0 137 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 OR51I1Q9H343 314 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 PLSCR4Q9NRQ2 329 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 GLRX2Q9NS18 164 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 RAB21Q9UL25 225 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 ACTL7BQ9Y614 415 aa17.45■□□□□ 0.38
LIME1-201ENST00000309546 DUXAA6NLW8 204 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 GJE1A6NN92 205 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 EFNA2O43921 213 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 ZNF500O60304 480 aaPredicted RBP17.44■□□□□ 0.38
LIME1-201ENST00000309546 SNUPNO95149 360 aaKnown RBP17.44■□□□□ 0.38
LIME1-201ENST00000309546 AK1P00568 194 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 LBPP18428 481 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 ADH6P28332 368 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 AGTR1P30556 359 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 CBFBQ13951 182 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 MPP2Q14168 576 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 TMEM176BQ3YBM2 270 aaPredicted RBP17.44■□□□□ 0.38
LIME1-201ENST00000309546 GTF2IRD2BQ6EKJ0 949 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 C22orf34Q6ZV56 151 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 GTF2IRD2Q86UP8 949 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 STK32CQ86UX6 486 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 WFDC11Q8NEX6 87 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 OR8J2Q8NGG1 315 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 ABHD3Q8WU67 409 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 CPNE4Q96A23 557 aaPredicted RBP17.44■□□□□ 0.38
LIME1-201ENST00000309546 ARSGQ96EG1 525 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 HS3ST6Q96QI5 342 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 TIGARQ9NQ88 270 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 EXD2Q9NVH0 621 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 PNPOQ9NVS9 261 aa17.44■□□□□ 0.38
LIME1-201ENST00000309546 BEX4Q9NWD9 120 aaPredicted RBP17.44■□□□□ 0.38
LIME1-201ENST00000309546 SERINC4A6NH21 518 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 EIF4E2O60573 245 aaKnown RBP17.43■□□□□ 0.38
LIME1-201ENST00000309546 STX11O75558 287 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 PABPC4LP0CB38 370 aaKnown RBP17.43■□□□□ 0.38
LIME1-201ENST00000309546 SLC7A1P30825 629 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 NME5P56597 212 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 SELENBP1Q13228 472 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 QPRTQ15274 297 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 SPANXN4Q5MJ08 99 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 TMEM201Q5SNT2 666 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 HHATQ5VTY9 493 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 TNFAIP8L2Q6P589 184 aaPredicted RBP17.43■□□□□ 0.38
LIME1-201ENST00000309546 KIRREL3Q8IZU9 778 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 VPS37AQ8NEZ2 397 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 OR5W2Q8NH69 310 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 RNF128Q8TEB7 428 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 ZFP90Q8TF47 636 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 MRGPRX4Q96LA9 322 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 NMUR2Q9GZQ4 415 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 COQ10BQ9H8M1 238 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 FANCFQ9NPI8 374 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 MKLN1Q9UL63 735 aa17.43■□□□□ 0.38
LIME1-201ENST00000309546 CENPVL1A0A0U1RR11 272 aa17.42■□□□□ 0.38
LIME1-201ENST00000309546 FCMRO60667 390 aa17.42■□□□□ 0.38
LIME1-201ENST00000309546 CSTAP01040 98 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms