RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 BPIP17213 487 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 CCNOP22674 350 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 CBLP22681 906 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 PPT1P50897 306 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 RAB8AP61006 207 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 KIAA0141Q14154 515 aaPredicted RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 SLC10A1Q14973 349 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 GLT8D1Q68CQ7 371 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 OR4F3Q6IEY1 312 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SLC27A4Q6P1M0 643 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ZNF454Q8N9F8 522 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 CAMKVQ8NCB2 501 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SMPDL3AQ92484 453 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ST6GAL2Q96JF0 529 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ZNF681Q96N22 645 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 CNTNAP3Q9BZ76 1288 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SEMA4CQ9C0C4 833 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ABCG5Q9H222 651 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SLC38A1Q9H2H9 487 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 TMPRSS5Q9H3S3 457 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ACTL8Q9H568 366 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 CDH20Q9HBT6 801 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 RHCGQ9UBD6 479 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ZFR2Q9UPR6 939 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 A0A1W2PS29 197 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SCO1O75880 301 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 UBL3O95164 117 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 MT-ND5P03915 603 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ACP2P11117 423 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SLC2A1P11166 492 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 CXCR1P25024 350 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 XCR1P46094 333 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 LIMK1P53667 647 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SNU13P55769 128 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 RPL24P83731 157 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 SMAD3P84022 425 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 ARHGAP40Q5TG30 622 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 OR52W1Q6IF63 320 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 KCTD20Q7Z5Y7 419 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 OR1S1Q8NH92 325 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ARSGQ96EG1 525 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 LRRC46Q96FV0 321 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 TGM7Q96PF1 710 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ADAM2Q99965 735 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 MACROD1Q9BQ69 325 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 OPA3Q9H6K4 179 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 OR6C2Q9NZP2 312 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 URADA6NGE7 173 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 LOC730098B7Z3J9 87 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 K7ERU9 68 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 PRAMEF2O60811 474 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 IFI6P09912 130 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ACRV1P26436 265 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SSR2P43308 183 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 HTR6P50406 440 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 P2RX1P51575 399 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SUMO1P63165 101 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 ARHGAP19Q14CB8 494 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SPRYD7Q5W111 196 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 LPCAT3Q6P1A2 487 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 LHFPL5Q8TAF8 219 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 WDR34Q96EX3 536 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 REEP6Q96HR9 211 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 KCNA7Q96RP8 456 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 MICU1Q9BPX6 476 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 IFT22Q9H7X7 185 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 BCL2L10Q9HD36 194 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 MS4A12Q9NXJ0 267 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 P2RX2Q9UBL9 471 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 COPS7AQ9UBW8 275 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 MRTO4Q9UKD2 239 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 CCL27Q9Y4X3 112 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 BACE2Q9Y5Z0 518 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 AGAP14A8MT82 685 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 IQCF5A8MTL0 148 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 I6L893 689 aaPredicted RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 CLDN5O00501 218 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 MITFO75030 526 aaPredicted RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 ZNF780AO75290 641 aaPredicted RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 MT-CO2P00403 227 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 EGFP01133 1207 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 IGHA2P01877 340 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ST3GAL3Q11203 375 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SF3B4Q15427 424 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS35-201ENST00000299138 ZNF789Q5FWF6 425 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 TMEM207Q6UWW9 146 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 PXKQ7Z7A4 578 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SCD5Q86SK9 330 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 TMPRSS11BQ86T26 416 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 PIM3Q86V86 326 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 OR1J4Q8NGS1 313 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 C16orf78Q8WTQ4 265 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 CDK15Q96Q40 435 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 OR51B5Q9H339 312 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 SEMA6CQ9H3T2 930 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 PDFQ9HBH1 243 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 MCCC2Q9HCC0 563 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ACKR4Q9NPB9 350 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ATXN7L1Q9ULK2 861 aaPredicted RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 FAM96BQ9Y3D0 163 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms