RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SP3Q02447 781 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 FGL1Q08830 312 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 SYTL3Q4VX76 610 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 NRMQ8IXM6 262 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 AMER3Q8N944 861 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 OR5J2Q8NH18 312 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 NSMAFQ92636 917 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 C4orf36Q96KX1 117 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 ZNF607Q96SK3 696 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 PLAGL1Q9UM63 463 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 SLC6A5Q9Y345 797 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 C5orf42Q9H799 3197 aa12.55□□□□□ -0.4
SKA3-201ENST00000298260 OR2M5A3KFT3 312 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 TO15178 435 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 HPP00738 406 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 NOGQ13253 232 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 SSX6Q7RTT6 188 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 HSD17B13Q7Z5P4 300 aaPredicted RBP12.54□□□□□ -0.4
SKA3-201ENST00000298260 ACBD7Q8N6N7 88 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 OR52N1Q8NH53 320 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 HAVCR2Q8TDQ0 301 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 GHSRQ92847 366 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 KCTD12Q96CX2 325 aaKnown RBP12.54□□□□□ -0.4
SKA3-201ENST00000298260 F2RL3Q96RI0 385 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 A4GALTQ9NPC4 353 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 SIRT3Q9NTG7 399 aaPredicted RBP12.54□□□□□ -0.4
SKA3-201ENST00000298260 CTSFQ9UBX1 484 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 ZMIZ1Q9ULJ6 1067 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 CACNA1CQ13936 2221 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 A0A1W2PS29 197 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 ANKRD61A6NGH8 418 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 TUBAL3A6NHL2 446 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 NPC1O15118 1278 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 KHDRBS3O75525 346 aaKnown RBP12.54□□□□□ -0.4
SKA3-201ENST00000298260 ZNF821O75541 412 aaPredicted RBP12.54□□□□□ -0.4
SKA3-201ENST00000298260 CAPZA2P47755 286 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 GATMP50440 423 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 CLLU1OSQ5K130 101 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 RBMS3Q6XE24 437 aaKnown RBP12.54□□□□□ -0.4
SKA3-201ENST00000298260 Q6ZVL8 140 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 TAS1R1Q7RTX1 841 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 VRK2Q86Y07 508 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 CYB561A3Q8NBI2 242 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 OR5M9Q8NGP3 310 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 RGMAQ96B86 450 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 SLC25A18Q9H1K4 315 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 MYNNQ9NPC7 610 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 CREBZFQ9NS37 354 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 MARK1Q9P0L2 795 aa12.54□□□□□ -0.4
SKA3-201ENST00000298260 A0A087WV48 116 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 TMEM200CA6NKL6 621 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 ABCD4O14678 606 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 ZDHHC11BP0C7U3 371 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 VSIG10L2P0DP72 767 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 PAICSP22234 425 aaKnown RBP12.53□□□□□ -0.4
SKA3-201ENST00000298260 HSD3B2P26439 372 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 CLDN2P57739 230 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 SMIM11AP58511 58 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 AP1S1P61966 158 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 SORDQ00796 357 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 RTP2Q5QGT7 225 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 METTL11BQ5VVY1 283 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 SLC22A10Q63ZE4 541 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 GLDNQ6ZMI3 551 aaPredicted RBP12.53□□□□□ -0.4
SKA3-201ENST00000298260 CXXC5Q7LFL8 322 aaKnown RBP12.53□□□□□ -0.4
SKA3-201ENST00000298260 TMEM255BQ8WV15 326 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 RFKQ969G6 155 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 FBXO17Q96EF6 278 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 WDR13Q9H1Z4 485 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 ZDHHC6Q9H6R6 413 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 EQTNQ9NQ60 294 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 OR51B4Q9Y5P0 310 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 H3BSH0 61 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 GOSR2O14653 212 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 ZNF197O14709 1029 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 TGM6O95932 706 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 MPC1LP0DKB6 136 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 EPXP11678 715 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 NOS3P29474 1203 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 GCGRP47871 477 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 RAB13P51153 203 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 CSRP2Q16527 193 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 CD300LDQ6UXZ3 194 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 SLC9B2Q86UD5 537 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 LDLRAD3Q86YD5 345 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 LURAP1LQ8IV03 231 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 CDH26Q8IXH8 852 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 PUSL1Q8N0Z8 303 aaKnown RBP12.53□□□□□ -0.4
SKA3-201ENST00000298260 ARL14Q8N4G2 192 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 SMIM4Q8WVI0 70 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 CXorf40BQ96DE9 158 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 C16orf58Q96GQ5 468 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 AHCYL2Q96HN2 611 aaKnown RBP12.53□□□□□ -0.4
SKA3-201ENST00000298260 CRB3Q9BUF7 120 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 PBX4Q9BYU1 374 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 ANKRD19PQ9H560 264 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 SLC39A1Q9NY26 324 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 B4GALT6Q9UBX8 382 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 MYOFQ9NZM1 2061 aa12.53□□□□□ -0.4
SKA3-201ENST00000298260 ARID1BQ8NFD5 2236 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms