RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CD200R1LQ6Q8B3 271 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 FAM131AQ6UXB0 335 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 NRARPQ7Z6K4 114 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 ARHGEF39Q8N4T4 335 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 TMEM99Q8N816 258 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 OR51A7Q8NH64 312 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 NEDD4LQ96PU5 975 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 LRRC61Q9BV99 259 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 SLC35F4A4IF30 521 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 SLC35E2P0CK97 266 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 BMP7P18075 431 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 S1PR1P21453 382 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 AMZ1Q400G9 498 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 KLHL12Q53G59 568 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 ZNF322Q6U7Q0 402 aaPredicted RBP18.56■□□□□ 0.56
VPS53-201ENST00000291074 C19orf47Q8N9M1 422 aaKnown RBP18.56■□□□□ 0.56
VPS53-201ENST00000291074 NLGN4YQ8NFZ3 816 aaPredicted RBP18.56■□□□□ 0.56
VPS53-201ENST00000291074 PEX11GQ96HA9 241 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 TXNDC15Q96J42 360 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 IFT27Q9BW83 186 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 VCANP13611 3396 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 CD8B2A6NJW9 211 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 C12orf71A8MTZ7 269 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 HYAL3O43820 417 aaPredicted RBP18.56■□□□□ 0.56
VPS53-201ENST00000291074 APOA1P02647 267 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 CD8BP10966 210 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 IL7P13232 177 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 MARCH9Q86YJ5 346 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 DEFB119Q8N690 84 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 ARIH2OSQ8N7S6 290 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 DIRAS2Q96HU8 199 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 FOLH1BQ9HBA9 442 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 GSTK1Q9Y2Q3 226 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 MED31Q9Y3C7 131 aa18.56■□□□□ 0.56
VPS53-201ENST00000291074 THADAQ6YHU6 1953 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 SPEGQ15772 3267 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 TMEM131Q92545 1883 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 C2orf92A0A1B0GVN3 265 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 A0A1W2PQ09 198 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 J3QRE1 110 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 CASKO14936 926 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 AKAP8O43823 692 aaKnown RBP18.55■□□□□ 0.56
VPS53-201ENST00000291074 REM1O75628 298 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 FGF9P31371 208 aaPredicted RBP18.55■□□□□ 0.56
VPS53-201ENST00000291074 CCR5P51681 352 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 FAM53BQ14153 422 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 GLYR1Q49A26 553 aaPredicted RBP18.55■□□□□ 0.56
VPS53-201ENST00000291074 MCATQ8IVS2 390 aaKnown RBP18.55■□□□□ 0.56
VPS53-201ENST00000291074 RNF113BQ8IZP6 322 aaKnown RBP18.55■□□□□ 0.56
VPS53-201ENST00000291074 MED18Q9BUE0 208 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 MARCH7Q9H992 704 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 SIGLEC7Q9Y286 467 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 A0A1B0GWA3 101 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 TRDV1A0A1B0GX56 115 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 GABRPO00591 440 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 AK1P00568 194 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 NOS3P29474 1203 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 GARNL3Q5VVW2 1013 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 GATAD2AQ86YP4 633 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 LNX2Q8N448 690 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 METTL27Q8N6F8 245 aaPredicted RBP18.55■□□□□ 0.56
VPS53-201ENST00000291074 OR52N1Q8NH53 320 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 TPSD1Q9BZJ3 242 aa18.55■□□□□ 0.56
VPS53-201ENST00000291074 HEATR5AQ86XA9 2040 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 A0A0C4DFX4 3053 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 AGRPO00253 132 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 NGFRP08138 427 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 MRPL3P09001 348 aaKnown RBP18.54■□□□□ 0.56
VPS53-201ENST00000291074 CLUP10909 449 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 DRD5P21918 477 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 PAICSP22234 425 aaKnown RBP18.54■□□□□ 0.56
VPS53-201ENST00000291074 SLC16A1P53985 500 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 FOXK2Q01167 660 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 KRR1Q13601 381 aaKnown RBP18.54■□□□□ 0.56
VPS53-201ENST00000291074 MEPCEQ7L2J0 689 aaKnown RBP18.54■□□□□ 0.56
VPS53-201ENST00000291074 AKAP14Q86UN6 197 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 CYB561A3Q8NBI2 242 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 ATP6V1C2Q8NEY4 427 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 SMAP2Q8WU79 429 aaPredicted RBP18.54■□□□□ 0.56
VPS53-201ENST00000291074 KISS1RQ969F8 398 aaPredicted RBP18.54■□□□□ 0.56
VPS53-201ENST00000291074 OR51V1Q9H2C8 321 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 TMEM27Q9HBJ8 222 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 GPR27Q9NS67 375 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 COMMD3Q9UBI1 195 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 FBXL4Q9UKA2 621 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 SIRT4Q9Y6E7 314 aaPredicted RBP18.54■□□□□ 0.56
VPS53-201ENST00000291074 GNB5O14775 395 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 FMO6PO60774 539 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 BMP8BP34820 402 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 RFX2P48378 723 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 DDI2Q5TDH0 399 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 PRPF38BQ5VTL8 546 aaKnown RBP18.54■□□□□ 0.56
VPS53-201ENST00000291074 TMPRSS11FQ6ZWK6 438 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 BMP8AQ7Z5Y6 402 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 GID4Q8IVV7 300 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 IL17RDQ8NFM7 739 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 PTP4A1Q93096 173 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 TMCO6Q96DC7 493 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 SPACA7Q96KW9 195 aa18.54■□□□□ 0.56
VPS53-201ENST00000291074 TIMP4Q99727 224 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms