RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ARHGAP9Q9BRR9 750 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 ALG8Q9BVK2 526 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 C2orf42Q9NWW7 574 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 CPNE7Q9UBL6 633 aa15.43■□□□□ 0.06
VPS54-201ENST00000272322 PLOD3O60568 738 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 STX11O75558 287 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 FCER2P06734 321 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 ST6GAL1P15907 406 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 BTG2P78543 158 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS54-201ENST00000272322 CRYZQ08257 329 aaKnown RBP15.42■□□□□ 0.06
VPS54-201ENST00000272322 ZNF267Q14586 743 aaPredicted RBP15.42■□□□□ 0.06
VPS54-201ENST00000272322 C3orf38Q5JPI3 329 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 PRPF38BQ5VTL8 546 aaKnown RBP15.42■□□□□ 0.06
VPS54-201ENST00000272322 SLC35B4Q969S0 331 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 TMCO6Q96DC7 493 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 BPIFA2Q96DR5 249 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 TXNDC15Q96J42 360 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 SPACA7Q96KW9 195 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 ARHGDIGQ99819 225 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 PAQR5Q9NXK6 330 aaPredicted RBP15.42■□□□□ 0.06
VPS54-201ENST00000272322 ADAM18Q9Y3Q7 739 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 SPAG17Q6Q759 2223 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 UNC119BA6NIH7 251 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 IFNA16P05015 189 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 FXYD6P3P58550 94 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 TEKQ02763 1124 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 DSG2Q14126 1118 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 TP53I3Q53FA7 332 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 AADACL4Q5VUY2 407 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 MBOAT2Q6ZWT7 520 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 C10orf53Q8N6V4 93 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 SENP5Q96HI0 755 aaPredicted RBP15.42■□□□□ 0.06
VPS54-201ENST00000272322 A0A075B6Q4 140 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 ANKRD61A6NGH8 418 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 EMDP50402 254 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 ZFP69Q49AA0 526 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 RANBP3LQ86VV4 465 aaPredicted RBP15.42■□□□□ 0.06
VPS54-201ENST00000272322 SLC37A3Q8NCC5 494 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 SFXN5Q8TD22 340 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 RFKQ969G6 155 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 HOXD1Q9GZZ0 328 aa15.42■□□□□ 0.06
VPS54-201ENST00000272322 KIR2DL3P43628 341 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 FOXL2P58012 376 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 SNRPD2P62316 118 aaKnown RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 FAM53BQ14153 422 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 ODF4Q2M2E3 257 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 OAFQ86UD1 273 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 NR2C2APQ86WQ0 139 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 C17orf47Q8NEP4 570 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 ZNF486Q96H40 463 aaPredicted RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 ZFP3Q96NJ6 502 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 IL20Q9NYY1 176 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 CALML5Q9NZT1 146 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 NDOR1Q9UHB4 597 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 SF3B6Q9Y3B4 125 aaKnown RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 A3GALT2U3KPV4 340 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 A0A1B0GVT2 93 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 FAM240BA0A1B0GVZ2 78 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 HNRNPA2B1P22626 353 aaKnown RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 MAZP56270 477 aaKnown RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 STX4Q12846 297 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 SNAP47Q5SQN1 464 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 IZUMO1Q8IYV9 350 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 FAM98AQ8NCA5 519 aaKnown RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 PTP4A1Q93096 173 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 B3GAT2Q9NPZ5 323 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 LYARQ9NX58 379 aaKnown RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 HEATR5AQ86XA9 2040 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 A0A0G2JMP0 313 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 A0A0X1KG70 313 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 AKAP8O43823 692 aaKnown RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 RPL4P36578 427 aaKnown RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 PSMB10P40306 273 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 PRAMEF17Q5VTA0 474 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 ACBD7Q8N6N7 88 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 SAMD12Q8N8I0 201 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 CAMKVQ8NCB2 501 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 OR4M2Q8NGB6 313 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 OR52E2Q8NGJ4 325 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 OR6K6Q8NGW6 343 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 C4orf36Q96KX1 117 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 PRSS27Q9BQR3 290 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 PITHD1Q9GZP4 211 aaPredicted RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 MEPEQ9NQ76 525 aaPredicted RBP15.41■□□□□ 0.06
VPS54-201ENST00000272322 SLC22A7Q9Y694 548 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 CDH10Q9Y6N8 788 aa15.41■□□□□ 0.06
VPS54-201ENST00000272322 C17orf51A8MQB3 221 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 PLA2G10O15496 165 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 SDC3O75056 442 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 MAOAP21397 527 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 RPS27P42677 84 aaKnown RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 RNF44Q7L0R7 432 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 CDK20Q8IZL9 346 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 RBM18Q96H35 190 aaKnown RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 MPDZO75970 2070 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 CDC14CA4D256 554 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 TRAPPC13A5PLN9 417 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 SLC9B1P1A6NJY1 282 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 GPR89AB7ZAQ6 455 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms