RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 OR2M2Q96R28 347 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 COQ3Q9NZJ6 369 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 GPR34Q9UPC5 381 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 PCDHA9Q9Y5H5 950 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF728P0DKX0 622 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SPP1P10451 314 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 AMTP48728 403 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 BTN1A1Q13410 526 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 LAPTM4AQ15012 233 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 KLHDC1Q8N7A1 406 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 FAM213BQ8TBF2 198 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 BCO2Q9BYV7 579 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 ASXL3Q9C0F0 2248 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 H7BYZ3 331 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SERTAD2Q14140 314 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 AADACL3Q5VUY0 350 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 TMEM244Q5VVB8 128 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 LIN28AQ9H9Z2 209 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC7A7Q9UM01 511 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 ABCA6Q8N139 1617 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 LOC285095A0A1B0GVY8 99 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 H7BY64 318 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 STAG3L2P0CL84 134 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 TYRP14679 529 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SFT2D3Q587I9 215 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 EARS2Q5JPH6 523 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF678Q5SXM1 525 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 LCTLQ6UWM7 567 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 ABHD15Q6UXT9 468 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 PRAP1Q96NZ9 151 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 EVA1AQ9H8M9 152 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SETD1AO15047 1707 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 FOXE1O00358 373 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 DBHP09172 617 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 ZFAND4Q86XD8 727 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 GLIS3Q8NEA6 775 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 RNF141Q8WVD5 230 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 GON7Q9BXV9 100 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 TGIF2Q9GZN2 237 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 OBP2BQ9NPH6 170 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 INPP5EQ9NRR6 644 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 POU4F3Q15319 338 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 METTL2BQ6P1Q9 378 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 NOL4LQ96MY1 436 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SEC22CQ9BRL7 303 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 MYEF2Q9P2K5 600 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 OSGIN2Q9Y236 505 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 EIF3FO00303 357 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 STC1P52823 247 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 AAK1Q2M2I8 961 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 MINDY1Q8N5J2 469 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 LIPHQ8WWY8 451 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 MUCL1Q96DR8 90 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 MRPL38Q96DV4 380 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 WASH6PQ9NQA3 447 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 TCTE1Q5JU00 501 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 OR2M7Q8NG81 312 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 NLE1Q9NVX2 485 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ARHGAP33O14559 1287 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 SUSD5O60279 629 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 OTX2P32243 289 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 HOXD12P35452 270 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 CHRNEQ04844 493 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 PLD6Q8N2A8 252 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 OR4K13Q8NH42 304 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ASB17Q8WXJ9 295 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 FAM71F1Q96KD3 344 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF586Q9NXT0 402 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 SUSD2Q9UGT4 822 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 THBS1P07996 1170 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 SPATA31C1P0DKV0 1188 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 CNR1P21554 472 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 PTGIRP43119 386 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 OR4C11Q6IEV9 310 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 SYT13Q7L8C5 426 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ADGRG3Q86Y34 549 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 STT3BQ8TCJ2 826 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 GPR83Q9NYM4 423 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 VSX1Q9NZR4 365 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 BAZ2AQ9UIF9 1905 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ARL2P36404 184 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 MRPL19P49406 292 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 CLEC1AQ8NC01 280 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ALG12Q9BV10 488 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 QRSL1Q9H0R6 528 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ADAM29Q9UKF5 820 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 ARL2-SNX15V9GYD0 113 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 PRAMEF27A3QJZ7 478 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 PPP5D1E7EU14 171 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 NDUFB2O95178 105 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 GSTP1P09211 210 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 OR5H8P0DN80 308 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 FPGSQ05932 587 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 RBMS2Q15434 407 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 PRAMEF9Q5VWM5 478 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 Q6ZVU0 165 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 WDR5BQ86VZ2 330 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 RNF175Q8N4F7 328 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 DHRS4L1P0CG22 281 aa13.16□□□□□ -0.3
CCDC88A-201ENST00000263630 SEC61A1P61619 476 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms