RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 PAQR8Q8TEZ7 354 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 TSEN15Q8WW01 171 aaKnown RBP3.47□□□□□ -1.85
CCDC54-201ENST00000261058 DYDC1Q8WWB3 177 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 TMEM37Q8WXS4 190 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 TOMM40LQ969M1 308 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 OPTNQ96CV9 577 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 WBP1Q96G27 269 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 CEP19Q96LK0 163 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 PYGO2Q9BRQ0 406 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 LLPHQ9BRT6 129 aaKnown RBP3.47□□□□□ -1.85
CCDC54-201ENST00000261058 ALG12Q9BV10 488 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 TMEM231Q9H6L2 316 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 IL1RL2Q9HB29 575 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 LY9Q9HBG7 655 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 C8orf4Q9NR00 106 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 CHMP2BQ9UQN3 213 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 AFF2P51816 1311 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 NCOA3Q9Y6Q9 1424 aa3.47□□□□□ -1.85
CCDC54-201ENST00000261058 HEATR9A2RTY3 570 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 VENTXO95231 258 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 GNA14O95837 355 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 NDUFB10O96000 172 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 RETP07949 1114 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ACADSP16219 412 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 PRKACAP17612 351 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 NCF2P19878 526 aaPredicted RBP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ATP6V1C1P21283 382 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 HTR2BP41595 481 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 HSPA13P48723 471 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 TUFMP49411 452 aaKnown RBP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ZFP36L1Q07352 338 aaKnown RBP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 CHRNA6Q15825 494 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 AANATQ16613 207 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 TATDN3Q17R31 274 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 TMEM44Q2T9K0 475 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ZNF699Q32M78 642 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ACSF3Q4G176 576 aaPredicted RBP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 CMPK2Q5EBM0 449 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 SPANXN2Q5MJ10 180 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 PHYHD1Q5SRE7 291 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 LEMD1Q68G75 181 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 REG3GQ6UW15 175 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 C10orf67Q8IYJ2 551 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ST13P4Q8IZP2 240 aaPredicted RBP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 CSGALNACT2Q8N6G5 542 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 LRRC17Q8N6Y2 441 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 OR8J1Q8NGP2 316 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ITLN1Q8WWA0 313 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ALS2CR12Q96Q35 445 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 CHP1Q99653 195 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 C9orf16Q9BUW7 83 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 TRIM62Q9BVG3 475 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 GPR174Q9BXC1 333 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 NLNQ9BYT8 704 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 AUNIPQ9H7T9 357 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 SYNDIG1Q9H7V2 258 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 WDR76Q9H967 626 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 ROPN1Q9HAT0 212 aaPredicted RBP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 C12orf10Q9HB07 376 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 PARVBQ9HBI1 364 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 APMAPQ9HDC9 416 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 IL26Q9NPH9 171 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 BATF3Q9NR55 127 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 AGPAT3Q9NRZ7 376 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 NUDT15Q9NV35 164 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 CLEC5AQ9NY25 188 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 EIF3KQ9UBQ5 218 aaKnown RBP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 CRLS1Q9UJA2 301 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 SF3B1O75533 1304 aaKnown RBP eCLIP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 CCDC171Q6TFL3 1326 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 PTPRGP23470 1445 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 KIF27Q86VH2 1401 aa3.46□□□□□ -1.86
CCDC54-201ENST00000261058 COL2A1P02458 1487 aaPredicted RBP3.46□□□□□ -1.86
CCDC54-201ENST00000261058 A0A0J9YYE9 177 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 C1orf232A0A0U1RR37 186 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 PCP4L1A6NKN8 68 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 TCP11X1B4DZS4 312 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 CYB561D2O14569 222 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 ADAM12O43184 909 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 BCL2L11O43521 198 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 SDC3O75056 442 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 ATP5HO75947 161 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 STK17BO94768 372 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 TOXO94900 526 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 MBD3O95983 291 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 CSTAP01040 98 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 TRBC1P01850 177 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 KRT6AP02538 564 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 UGT2B4P06133 528 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 GP9P14770 177 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 POU2F1P14859 743 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 CFL1P23528 166 aaKnown RBP3.45□□□□□ -1.86
CCDC54-201ENST00000261058 UCP1P25874 307 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 CHI3L1P36222 383 aaPredicted RBP3.45□□□□□ -1.86
CCDC54-201ENST00000261058 ELK3P41970 407 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 SYKP43405 635 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 GDI2P50395 445 aaKnown RBP3.45□□□□□ -1.86
CCDC54-201ENST00000261058 SGSHP51688 502 aa3.45□□□□□ -1.86
CCDC54-201ENST00000261058 CLDN8P56748 225 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms