RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SLC6A20Q9NP91 592 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 CD300AQ9UGN4 299 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 DHDHQ9UQ10 334 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 RNF215Q9Y6U7 377 aa12.71□□□□□ -0.37
LDLR-201ENST00000252444 A8MVM7 634 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 IGLV3-19P01714 112 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 NELFEP18615 380 aaKnown RBP12.71□□□□□ -0.38
LDLR-201ENST00000252444 ACVR1BP36896 505 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 CDKN2CP42773 168 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 PGGHGQ32M88 737 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 DPY19L2P2Q6ZN68 376 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 DPPA2Q7Z7J5 298 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 PARP8Q8N3A8 854 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 URM1Q9BTM9 101 aaKnown RBP12.71□□□□□ -0.38
LDLR-201ENST00000252444 GPR87Q9BY21 358 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 FARSAQ9Y285 508 aaKnown RBP12.71□□□□□ -0.38
LDLR-201ENST00000252444 ASB4Q9Y574 426 aa12.71□□□□□ -0.38
LDLR-201ENST00000252444 MAGED1Q9Y5V3 778 aaPredicted RBP12.71□□□□□ -0.38
LDLR-201ENST00000252444 IQCMA0A1B0GVH7 501 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 CIB4A0PJX0 185 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 ZNF891A8MT65 544 aaPredicted RBP12.7□□□□□ -0.38
LDLR-201ENST00000252444 J3QLW9 94 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 CH25HO95992 272 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 ZNF19P17023 458 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 ELAVL4P26378 380 aaKnown RBP12.7□□□□□ -0.38
LDLR-201ENST00000252444 DMWDQ09019 674 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 GPR19Q15760 415 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 ZNF528Q3MIS6 628 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 SOX17Q9H6I2 414 aaPredicted RBP12.7□□□□□ -0.38
LDLR-201ENST00000252444 C12orf10Q9HB07 376 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 ING4Q9UNL4 249 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 OR1D4P47884 311 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 LTB4RQ15722 352 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 RNF220Q5VTB9 566 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 DNAJC5GQ8N7S2 189 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 SLC38A5Q8WUX1 472 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 ZNF583Q96ND8 569 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 ATG4BQ9Y4P1 393 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 C12orf71A8MTZ7 269 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 SPARCP09486 303 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 ZNF883P0CG24 379 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 DRD5P21918 477 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 PMS2CLQ68D20 193 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 LEG1Q6P5S2 330 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 OR5W2Q8NH69 310 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 FAM46AQ96IP4 442 aaKnown RBP12.7□□□□□ -0.38
LDLR-201ENST00000252444 OR2A14Q96R47 310 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 TM9SF2Q99805 663 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 STARD5Q9NSY2 213 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 TMEM127O75204 238 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 DDAH2O95865 285 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 HOXA6P31267 233 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 PGGT1BP53609 377 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 E2F2Q14209 437 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 MRPL2Q5T653 305 aaKnown RBP12.7□□□□□ -0.38
LDLR-201ENST00000252444 CDH20Q9HBT6 801 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 SLC23A2Q9UGH3 650 aa12.7□□□□□ -0.38
LDLR-201ENST00000252444 TRIP12Q14669 1992 aaPredicted RBP12.7□□□□□ -0.38
LDLR-201ENST00000252444 IGHV1OR21-1A0A087WYE8 117 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 C21orf140B9A014 251 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 ST3GAL4Q11206 333 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 EXOSC7Q15024 291 aaKnown RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 GTDC1Q4AE62 458 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 BCL2L15Q5TBC7 163 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 RPS19BP1Q86WX3 136 aaKnown RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 SLC35F2Q8IXU6 374 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 GATSQ8NAP1 163 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 C1orf216Q8TAB5 229 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 PGAM5Q96HS1 289 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 RASD1Q9Y272 281 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 GMEB1Q9Y692 573 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 TRIP11Q15643 1979 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 H0Y8X5 98 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 TBX1O43435 398 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 GPRIN2O60269 458 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 ZNF45Q02386 682 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 HSD17B12Q53GQ0 312 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 S100A16Q96FQ6 103 aaKnown RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 COG8Q96MW5 612 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 TUBB1Q9H4B7 451 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 CHMP1AQ9HD42 196 aaPredicted RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 ING3Q9NXR8 418 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 STMND1H3BQB6 276 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 ADAM23O75077 832 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 MT-CO3P00414 261 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 ST6GAL1P15907 406 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 ARPC4P59998 168 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 SCRN3Q0VDG4 424 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 ZIC1Q15915 447 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 TSTQ16762 297 aaKnown RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 TMEM244Q5VVB8 128 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 XKRXQ6PP77 449 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 INTS12Q96CB8 462 aaKnown RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 ADOQ96SZ5 270 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 NKX1-2Q9UD57 310 aaPredicted RBP12.69□□□□□ -0.38
LDLR-201ENST00000252444 PCDHGA10Q9Y5H3 936 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 B4E171 279 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 NID1P14543 1247 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 TSPAN7P41732 249 aa12.69□□□□□ -0.38
LDLR-201ENST00000252444 SELENBP1Q13228 472 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms