RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CDC42EP1Q00587 391 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GK3PQ14409 553 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 BAK1Q16611 211 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SPRED3Q2MJR0 410 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GOLGA7BQ2TAP0 167 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LDLRAD2Q5SZI1 272 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 MED25Q71SY5 747 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GRINAQ7Z429 371 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PDZD9Q8IXQ8 264 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 METTL13Q8N6R0 699 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CHDHQ8NE62 594 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FAM71F1Q96KD3 344 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PCYOX1Q9UHG3 505 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 AGO1Q9UL18 857 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SLC31A1O15431 190 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SNAPINO95295 136 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GJB1P08034 283 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GPR143P51810 404 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FGF8P55075 233 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SLBPQ14493 270 aaKnown RBP eCLIP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HLXQ14774 488 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HIF1AQ16665 826 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GAB4Q2WGN9 574 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PIM3Q86V86 326 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RAB2BQ8WUD1 216 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ARL11Q969Q4 196 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ADGRG7Q96K78 797 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ADAMTS10Q9H324 1103 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TDRD3Q9H7E2 651 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ZBTB26Q9HCK0 441 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 BTNL2Q9UIR0 455 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FXYD6-FXYD2A0A087WZ82 144 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FAM170BA6NMN3 283 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 EDF1O60869 148 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 INHAP05111 366 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RAP2AP10114 183 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 BMP7P18075 431 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HRH2P25021 359 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TAS2R38P59533 333 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 NUTF2P61970 127 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CST9Q5W186 159 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GRHL2Q6ISB3 625 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HIST2H3AQ71DI3 136 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FAM35AQ86V20 835 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 VRK3Q8IV63 474 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GABRG1Q8N1C3 465 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ATOH1Q92858 354 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ESAMQ96AP7 390 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 FXYD6Q9H0Q3 95 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LHX5Q9H2C1 402 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 NLE1Q9NVX2 485 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GAR1Q9NY12 217 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SOBPA7XYQ1 873 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 DCKP27707 260 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PSMD8P48556 350 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HNRNPA3P51991 378 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GEMP55040 296 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SH3BP2P78314 561 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HYAL2Q12891 473 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CCL15Q16663 113 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SIGLEC15Q6ZMC9 328 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HMGN2P46Q86SG4 172 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 LRRTM1Q86UE6 522 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OR5AK3PQ8NH89 298 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RETNQ9HD89 108 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 COA4Q9NYJ1 87 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 NAGKQ9UJ70 344 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PQLC2LA1A4F0 135 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 H7C4K7 107 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 HLA-GP17693 338 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ASPAP45381 313 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CRYBA4P53673 196 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ATP1B3P54709 279 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PLP1P60201 277 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SF3A2Q15428 464 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RBMS2Q15434 407 aaKnown RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 UBE2SQ16763 222 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 C14orf28Q4W4Y0 310 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TPTE2P1Q5T6R2 138 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 C4orf32Q8N8J7 132 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PLA2G15Q8NCC3 412 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 NLGN2Q8NFZ4 835 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 OR52E5Q8NH55 327 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PHOSPHO1Q8TCT1 267 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PRRG4Q9BZD6 226 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GTSF1LQ9H1H1 148 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 MEGF9Q9H1U4 602 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RAB26Q9ULW5 256 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 PLXNB3Q9ULL4 1909 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 ST20-MTHFSA0A0A6YYL1 179 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1B0GTH6 734 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM82A0PJX8 343 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 BLOC1S5-TXNDC5H3BN57 136 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CTNSO60931 367 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GYPCP04921 128 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SPATA31C1P0DKV0 1188 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 SPNP16150 400 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 GPX4P36969 197 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-221ENST00000641996 RFC3P40938 356 aa3.35□□□□□ -1.87
SCN1A-221ENST00000641996 CCNIQ14094 377 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms