RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 DLEU7Q6UYE1 221 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 SPNS3Q6ZMD2 512 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 FRRS1Q6ZNA5 592 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 YRDCQ86U90 279 aaKnown RBP16.17■□□□□ 0.18
CLN3-247ENST00000636351 MISPQ8IVT2 679 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 TMCO5AQ8N6Q1 288 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 POU5F2Q8N7G0 328 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 FAM83FQ8NEG4 500 aaPredicted RBP16.17■□□□□ 0.18
CLN3-247ENST00000636351 OR2M3Q8NG83 312 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 CGREF1Q99674 301 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 CPPED1Q9BRF8 314 aaPredicted RBP16.17■□□□□ 0.18
CLN3-247ENST00000636351 UBQLN3Q9H347 655 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 PTGES2Q9H7Z7 377 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 THUMPD1Q9NXG2 353 aaKnown RBP16.17■□□□□ 0.18
CLN3-247ENST00000636351 ARL2BPQ9Y2Y0 163 aa16.17■□□□□ 0.18
CLN3-247ENST00000636351 NCKAP5O14513 1909 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 TRBV5-3A0A0A0MS03 114 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 A0A1W2PQD3 144 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 NKX2-6A6NCS4 301 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 NPIPA2E9PIF3 369 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 NPIPA3F8WFD2 350 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 GTPBP1O00178 669 aaKnown RBP16.16■□□□□ 0.18
CLN3-247ENST00000636351 FBP2O00757 339 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 HCRTR2O43614 444 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 DPP4P27487 766 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 CRISP3P54108 245 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 GNA13Q14344 377 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 CD226Q15762 336 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 EIPR1Q53HC9 387 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 WIPI1Q5MNZ9 446 aaPredicted RBP16.16■□□□□ 0.18
CLN3-247ENST00000636351 TMEM211Q6ICI0 200 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 TYW3Q6IPR3 259 aaKnown RBP16.16■□□□□ 0.18
CLN3-247ENST00000636351 HMGN2P46Q86SG4 172 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 RPRMLQ8N4K4 120 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 FADS6Q8N9I5 356 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 PCYOX1LQ8NBM8 494 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 ASB5Q8WWX0 329 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 THUMPD3Q9BV44 507 aaKnown RBP16.16■□□□□ 0.18
CLN3-247ENST00000636351 UCK2Q9BZX2 261 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 TP63Q9H3D4 680 aaPredicted RBP16.16■□□□□ 0.18
CLN3-247ENST00000636351 CACYBPQ9HB71 228 aaKnown RBP16.16■□□□□ 0.18
CLN3-247ENST00000636351 ACKR4Q9NPB9 350 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 NPDC1Q9NQX5 325 aaPredicted RBP16.16■□□□□ 0.18
CLN3-247ENST00000636351 PLSCR2Q9NRY7 297 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 TAS2R10Q9NYW0 307 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 CALML5Q9NZT1 146 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 RNF6Q9Y252 685 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 DTNAQ9Y4J8 743 aa16.16■□□□□ 0.18
CLN3-247ENST00000636351 PRAMEF27A3QJZ7 478 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 C5orf58C9J3I9 102 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 FAM47E-STBD1D6RA91 191 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 NPIPB9F8W1W9 429 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 AQP7O14520 342 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 SUSD5O60279 629 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 CYP7B1O75881 506 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 HPNP05981 417 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 NUDT7P0C024 238 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 UBL4AP11441 157 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 IGFBP2P18065 325 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 CHRNB4P30926 498 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 SRD5A2P31213 254 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 DSCR4P56555 118 aaPredicted RBP16.15■□□□□ 0.18
CLN3-247ENST00000636351 MTPNP58546 118 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 CHRNEQ04844 493 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 GANABQ14697 944 aaKnown RBP16.15■□□□□ 0.18
CLN3-247ENST00000636351 CYP51A1Q16850 503 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 KLHL26Q53HC5 615 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 COQ5Q5HYK3 327 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 RAET1LQ5VY80 246 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 LRRC74BQ6ZQY2 392 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 MTERF4Q7Z6M4 381 aaKnown RBP16.15■□□□□ 0.18
CLN3-247ENST00000636351 IFNEQ86WN2 208 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 NEIL3Q8TAT5 605 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 MAL2Q969L2 176 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 RCN3Q96D15 328 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 TMEM19Q96HH6 336 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 ANKRD27Q96NW4 1050 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 CCT8L2Q96SF2 557 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 CCDC106Q9BWC9 280 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 OR2B2Q9GZK3 357 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 QRSL1Q9H0R6 528 aaKnown RBP16.15■□□□□ 0.18
CLN3-247ENST00000636351 SLC38A1Q9H2H9 487 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 IKZF5Q9H5V7 419 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 GID8Q9NWU2 228 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 SPRR3Q9UBC9 169 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 TNFRSF10DQ9UBN6 386 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 ADAM21Q9UKJ8 722 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 ACAD8Q9UKU7 415 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 RPH3AQ9Y2J0 694 aaPredicted RBP16.15■□□□□ 0.18
CLN3-247ENST00000636351 SLC6A5Q9Y345 797 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 NF1P21359 2839 aa16.15■□□□□ 0.18
CLN3-247ENST00000636351 ZFHX3Q15911 3703 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 CENPVL1A0A0U1RR11 272 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 SERINC4A6NH21 518 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 UGT2B17O75795 530 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 NUDT14O95848 222 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 FREM3P0C091 2139 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 COX4I1P13073 169 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 HK1P19367 917 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 CCR4P51679 360 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 169.3 ms