RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 MEGF11A6BM72 1044 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 GABRR3A8MPY1 467 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 POP7O75817 140 aaKnown RBP4.68□□□□□ -1.66
VPS13D-213ENST00000613099 SFTA3P0C7M3 94 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 CASP6P55212 293 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 HTD2P86397 168 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 SP2Q02086 613 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 COL9A3Q14050 684 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-213ENST00000613099 CPSF6Q16630 551 aaKnown RBP eCLIP4.68□□□□□ -1.66
VPS13D-213ENST00000613099 PCGF3Q3KNV8 242 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 ZNF836Q6ZNA1 936 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 DPPA4Q7L190 304 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 PPP1R3CQ9UQK1 317 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 CD8B2A6NJW9 211 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 A8MT66 165 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 GPR37O15354 613 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 CD8BP10966 210 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 GPX3P22352 226 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 KIR2DL3P43628 341 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 RPE65Q16518 533 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 LRRC70Q7Z2Q7 622 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 BORCS7Q96B45 105 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 GGACTQ9BVM4 153 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 MAP3K8P41279 467 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 DVL1P1P54792 670 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-213ENST00000613099 TAS2R19P59542 299 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 SLC22A18Q96BI1 424 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 PKP4Q99569 1192 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 C20orf85Q9H1P6 137 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 NMUR1Q9HB89 426 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 CAMTA1Q9Y6Y1 1673 aa4.68□□□□□ -1.66
VPS13D-213ENST00000613099 J3QLW9 94 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 MATN3O15232 486 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 PRAMEF12O95522 483 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ZNF19P17023 458 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 PCGF2P35227 344 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 OR3A1P47881 315 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 KCNJ3P48549 501 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 DHPSP49366 369 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 RIDAP52758 137 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 LCN6P62502 163 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 DUSP18Q8NEJ0 188 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 DUSP19Q8WTR2 217 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 GCDHQ92947 438 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 TIFAQ96CG3 184 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 PACRGQ96M98 296 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ZNF2Q9BSG1 426 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ZDHHC11Q9H8X9 412 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 TM7SF3Q9NS93 570 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 RNF24Q9Y225 148 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 NPEPPSL1A6NEC2 478 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 TMX2-CTNND1H3BSU7 103 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 SMIM22K7EJ46 135 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 GABRDO14764 452 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ANGPTL7O43827 346 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 LPOP22079 712 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 APEX1P27695 318 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 STXBP1P61764 594 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 NFKB2Q00653 900 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 TMEM115Q12893 351 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 KDM4DQ6B0I6 523 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 TMEM71Q6P5X7 295 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 SERPINA11Q86U17 422 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 PLA2G15Q8NCC3 412 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 USP36Q9P275 1121 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ZMIZ1Q9ULJ6 1067 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 STRAPQ9Y3F4 350 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 CDHR4A6H8M9 788 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ANXA4P09525 319 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ACAA2P42765 397 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 MTNR1BP49286 362 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 BIDP55957 195 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ACY1Q03154 408 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 CEBPEQ15744 281 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 STEAP1BQ6NZ63 245 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 RNF113BQ8IZP6 322 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 OR1J2Q8NGS2 313 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 OR52P1PQ8NH57 321 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 SIGLEC10Q96LC7 697 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 CASD1Q96PB1 797 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 TAPBPLQ9BX59 468 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 PARD6GQ9BYG4 376 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 CERS4Q9HA82 394 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 STEAP1Q9UHE8 339 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 POLR1DQ9Y2S0 133 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 HRH2P25021 359 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 RAB7AP51149 207 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 WDR5P61964 334 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 RAB11AP62491 216 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 GANABQ14697 944 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 P2RY14Q15391 338 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 CLEC12AQ5QGZ9 265 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 MANEAQ5SRI9 462 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 NADSYN1Q6IA69 706 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 COMMD2Q86X83 199 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 BPIFB2Q8N4F0 458 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 ZNF668Q96K58 619 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 NDRG4Q9ULP0 352 aaKnown RBP4.67□□□□□ -1.66
VPS13D-213ENST00000613099 NPIPA5A0A0B4J1W7 369 aa4.67□□□□□ -1.66
VPS13D-213ENST00000613099 P2RY4P51582 365 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms