RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CSNK1DP48730 415 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 GBX2P52951 348 aaPredicted RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 ARSFP54793 590 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 MTTPP55157 894 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 YWHAEP62258 255 aaKnown RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 SIRPAP78324 504 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 LOXL1Q08397 574 aaPredicted RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 MZT1Q08AG7 82 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 ACSM1Q08AH1 577 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 XRCC4Q13426 336 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 RIPK1Q13546 671 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 ZIC1Q15915 447 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 CDO1Q16878 200 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 KNOP1Q1ED39 458 aaKnown RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 CCDC14Q49A88 953 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 KLHL10Q6JEL2 608 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 NHLRC1Q6VVB1 395 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 TRIM73Q86UV7 250 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 EXOC3L1Q86VI1 746 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 FAM110DQ8TAY7 271 aaPredicted RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 GPT2Q8TD30 523 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 TMEM170AQ8WVE7 144 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 GIMAP1Q8WWP7 306 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 KAT2AQ92830 837 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 DTNBP1Q96EV8 351 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 IMMP1LQ96LU5 166 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 ABHD6Q9BV23 337 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 RBM4Q9BWF3 364 aaKnown RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 RBM24Q9BX46 236 aaKnown RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 ACPTQ9BZG2 426 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 TM6SF1Q9BZW5 370 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 KCNK15Q9H427 330 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 SH2D2AQ9NP31 389 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 DNAJC11Q9NVH1 559 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 DMAC2Q9NW81 257 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 HIF1ANQ9NWT6 349 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 RAB20Q9NX57 234 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 NLKQ9UBE8 527 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF629Q9UEG4 869 aaPredicted RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 NDRG3Q9UGV2 375 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 DTX4Q9Y2E6 619 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 KLF13Q9Y2Y9 288 aaPredicted RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 CAB39Q9Y376 341 aaPredicted RBP3.86□□□□□ -1.79
LINC00540-201ENST00000611481 PTGDR2Q9Y5Y4 395 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 ALPK2Q86TB3 2170 aa3.86□□□□□ -1.79
LINC00540-201ENST00000611481 ARHGAP21Q5T5U3 1957 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 IGHV3-20A0A0C4DH32 117 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 C13orf42A0A1B0GVH6 325 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 A0A1W2PQ72 361 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 H0YC42 278 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 BOLA2-SMG1P6H3BVE0 249 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 J3KR12 359 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 PES1O00541 588 aaKnown RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 SMAD9O15198 467 aaKnown RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 SSX4O60224 188 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 NDUFS7O75251 213 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 MTX2O75431 263 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF432O94892 652 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 SLC25A14O95258 325 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 DIRAS3O95661 229 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 SLC16A8O95907 504 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 MT-ATP6P00846 226 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 IL1AP01583 271 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 MBPP02686 304 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 NR3C1P04150 777 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ENO1P06733 434 aaKnown RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 CYC1P08574 325 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ABHD2P08910 425 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 FCGR2AP12318 317 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 EEF1B2P24534 225 aaKnown RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 STAT6P42226 847 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 FRKP42685 505 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 PITPNBP48739 271 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF136P52737 540 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 CDH13P55290 713 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 DSCR9P59020 149 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 PPIAP62937 165 aaKnown RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 TRA2BP62995 288 aaKnown RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 RAE1P78406 368 aaKnown RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 SF3B4Q15427 424 aaKnown RBP eCLIP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 CAMK4Q16566 473 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 BOLA3Q53S33 107 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 C6orf141Q5SZD1 244 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 OTUD3Q5T2D3 398 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 LRIF1Q5T3J3 769 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 WLSQ5T9L3 541 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 H3F3CQ6NXT2 135 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 AFTPHQ6ULP2 937 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 FAM183BPQ6ZVS7 135 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 LUZP2Q86TE4 346 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 LDB1Q86U70 411 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 FAM131BQ86XD5 332 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 TDRPQ86YL5 185 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF547Q8IVP9 402 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 PM20D2Q8IYS1 436 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ZNF441Q8N8Z8 693 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 ZFP62Q8NB50 900 aaPredicted RBP3.85□□□□□ -1.79
LINC00540-201ENST00000611481 UXS1Q8NBZ7 420 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 FBXL13Q8NEE6 735 aa3.85□□□□□ -1.79
LINC00540-201ENST00000611481 GOLGA5Q8TBA6 731 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms