RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CCRL2O00421 344 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 PRODHO43272 600 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 LRRTM2O43300 516 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 PRAMEF2O60811 474 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 GPX5O75715 221 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 CD79BP40259 229 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 RHAGQ02094 409 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 OR2G6Q5TZ20 316 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 B3GLCTQ6Y288 498 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 GATAD2AQ86YP4 633 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 SDR16C5Q8N3Y7 309 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 TOR1AIP2Q8NFQ8 470 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 PTPMT1Q8WUK0 201 aaPredicted RBP13.36□□□□□ -0.27
VRK3-217ENST00000599538 OSTF1Q92882 214 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 DTNBP1Q96EV8 351 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 RNFT2Q96EX2 444 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 TRMT61AQ96FX7 289 aaKnown RBP13.36□□□□□ -0.27
VRK3-217ENST00000599538 CHRNA10Q9GZZ6 450 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 OR52D1Q9H346 318 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 UBQLN3Q9H347 655 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 DIMT1Q9UNQ2 313 aaKnown RBP13.36□□□□□ -0.27
VRK3-217ENST00000599538 CDH10Q9Y6N8 788 aa13.36□□□□□ -0.27
VRK3-217ENST00000599538 WDFY4Q6ZS81 3184 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 A0A1B0GWA3 101 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 A0A1W2PPC1 479 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 KDM4EB2RXH2 506 aaPredicted RBP13.35□□□□□ -0.27
VRK3-217ENST00000599538 NPIPB9F8W1W9 429 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 PDGFBP01127 241 aaPredicted RBP13.35□□□□□ -0.27
VRK3-217ENST00000599538 SCG5P05408 212 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 BMP4P12644 408 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 TBXA2RP21731 343 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 GCGRP47871 477 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 FOXL2P58012 376 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 HSD11B2P80365 405 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 AADACL4Q5VUY2 407 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 THSD4Q6ZMP0 1018 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 CROCCP3Q8IVE0 287 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 TMEM151BQ8IW70 566 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 BCORP1Q8N888 145 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 OR6Q1Q8NGQ2 317 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 OR13C2Q8NGS9 318 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 FNDC8Q8TC99 324 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 SENP5Q96HI0 755 aaPredicted RBP13.35□□□□□ -0.27
VRK3-217ENST00000599538 SLC38A2Q96QD8 506 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 CD180Q99467 661 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 NUDT22Q9BRQ3 303 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 PNO1Q9NRX1 252 aaKnown RBP13.35□□□□□ -0.27
VRK3-217ENST00000599538 CFAP54Q96N23 3096 aa13.35□□□□□ -0.27
VRK3-217ENST00000599538 A0A0B4J2E0 115 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 A0A1B0GX12 115 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 UNC119BA6NIH7 251 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 C17orf105B2RV13 164 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 CLDN25C9JDP6 229 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 FMO6PO60774 539 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 RAB36O95755 333 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 GLB1P16278 677 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 UGT2B10P36537 528 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 MTNR1AP48039 350 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 CSTF1Q05048 431 aaKnown RBP13.34□□□□□ -0.27
VRK3-217ENST00000599538 SLC35F1Q5T1Q4 408 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 C16orf87Q6PH81 154 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 TMPRSS9Q7Z410 1059 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 CYP4Z2PQ8N1L4 340 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 MFSD4AQ8N468 514 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 TMCO5AQ8N6Q1 288 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 PROKR2Q8NFJ6 384 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 ADAMTS18Q8TE60 1221 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 EFHD2Q96C19 240 aaPredicted RBP13.34□□□□□ -0.27
VRK3-217ENST00000599538 BPIFA2Q96DR5 249 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 MND1Q9BWT6 205 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 POLR2J2Q9GZM3 115 aaKnown RBP13.34□□□□□ -0.27
VRK3-217ENST00000599538 Q9N2J8 555 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 HINT3Q9NQE9 182 aaKnown RBP13.34□□□□□ -0.27
VRK3-217ENST00000599538 CBLCQ9ULV8 474 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 OR10H1Q9Y4A9 318 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 TRAV27A0A087WT01 109 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 SOCS6O14544 535 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 GNB5O14775 395 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 PRKCDQ05655 676 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 ZNF141Q15928 474 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 MINDY4Q4G0A6 757 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 VWA2Q5GFL6 755 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 WDR45BQ5MNZ6 344 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 DESI1Q6ICB0 168 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 NIPAL1Q6NVV3 410 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 SMARCD3Q6STE5 483 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 GRAMD2AQ8IUY3 354 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 PRSS58Q8IYP2 241 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 OR2T33Q8NG76 320 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 OR4F15Q8NGB8 312 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 TM9SF4Q92544 642 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 PMM1Q92871 262 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 CDADC1Q9BWV3 514 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 MED20Q9H944 212 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 TMEM27Q9HBJ8 222 aa13.34□□□□□ -0.27
VRK3-217ENST00000599538 MRPS18AQ9NVS2 196 aaKnown RBP13.34□□□□□ -0.27
VRK3-217ENST00000599538 PNMA8CA0A1B0GUJ8 204 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 ZC3H12DA2A288 527 aaKnown RBP13.33□□□□□ -0.28
VRK3-217ENST00000599538 BLACEA4D250 179 aa13.33□□□□□ -0.28
VRK3-217ENST00000599538 METTL15A6NJ78 407 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms