RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 CASP8Q14790 479 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 ATAD3BQ5T9A4 648 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 C16orf62Q7Z3J2 963 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 GGNQ86UU5 652 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 CHDHQ8NE62 594 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 ZNF845Q96IR2 970 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 DOCK7Q96N67 2140 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 SDF2Q99470 211 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 NMUR2Q9GZQ4 415 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 SERHL2Q9H4I8 314 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 WDR55Q9H6Y2 383 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 RNF122Q9H9V4 155 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 AIG1Q9NVV5 245 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 PAQR5Q9NXK6 330 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 DNAJB12Q9NXW2 375 aaKnown RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 GALNT8Q9NY28 637 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 ITGB1BP2Q9UKP3 347 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 DTNAQ9Y4J8 743 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 ANKHD1Q8IWZ3 2542 aaKnown RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 GOLGA8QA0A0J9YX86 632 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 GOLGA8OA6NCC3 632 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 A6NNC1 897 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 A8MXE2 369 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 NPIPB9F8W1W9 429 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 GOLGA8NF8WBI6 632 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 MSTNO14793 375 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 STX11O75558 287 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 SMNDC1O75940 238 aaKnown RBP eCLIP13.73□□□□□ -0.211e-13■□□□□ 8.8
TRIM28-203ENST00000593582 AGR2O95994 175 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 LINGO3P0C6S8 592 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 EPXP11678 715 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 PSMA4P25789 261 aaKnown RBP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 CHI3L1P36222 383 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 CPOXP36551 454 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 RNF144AP50876 292 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 P2RX1P51575 399 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 SUMO3P55854 103 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 UFM1P61960 85 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 FGFBP1Q14512 234 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 GPR68Q15743 365 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 ARHGAP11BQ3KRB8 267 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 NXNQ6DKJ4 435 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 PPP4R4Q6NUP7 873 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 CBLN3Q6UW01 205 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 TRIML2Q8N7C3 387 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 OR10D3Q8NH80 312 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 LINC01560Q8TB33 94 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 MIPOL1Q8TD10 442 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 STARD4Q96DR4 205 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 TEX37Q96LM6 180 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 ZBTB18Q99592 522 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 GPATCH1Q9BRR8 931 aaKnown RBP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 POLDIP3Q9BY77 421 aaKnown RBP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 PRRG4Q9BZD6 226 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 CLEC4MQ9H2X3 399 aaPredicted RBP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 OR51I1Q9H343 314 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 BTNL2Q9UIR0 455 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 MCTS1Q9ULC4 181 aaKnown RBP13.73□□□□□ -0.21
TRIM28-203ENST00000593582 CARD8Q9Y2G2 431 aa13.73□□□□□ -0.21
TRIM28-203ENST00000593582 ADAMDEC1O15204 470 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 PGRP06401 933 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 ADH6P28332 368 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 CASP9P55211 416 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 SIRPAP78324 504 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 LRRC74AQ0VAA2 488 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 DAZAP2Q15038 168 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-203ENST00000593582 PDSS1Q5T2R2 415 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 PDZK1Q5T2W1 519 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 AGBL2Q5U5Z8 902 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 FBXW10Q5XX13 1052 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 ESPNLQ6ZVH7 1005 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 TMCO5AQ8N6Q1 288 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 XAGE5Q8WWM1 108 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 NEURL3Q96EH8 262 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 CCDC115Q96NT0 180 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 OR52E6Q96RD3 313 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 NPAS1Q99742 590 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 SLC35A5Q9BS91 424 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 TMEM185BQ9H7F4 350 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 RASSF1Q9NS23 344 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 ICAM5Q9UMF0 924 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 GPR45Q9Y5Y3 372 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 GPC6Q9Y625 555 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-203ENST00000593582 ANKRD17O75179 2603 aaKnown RBP13.72□□□□□ -0.21
TRIM28-203ENST00000593582 CELSR1Q9NYQ6 3014 aa13.72□□□□□ -0.21
TRIM28-203ENST00000593582 CCDC168Q8NDH2 2452 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 FAM221AA4D161 298 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 SERINC4A6NH21 518 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 TNFSF11O14788 317 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 KLF11O14901 512 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 ZNF264O43296 627 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 EIF4E2O60573 245 aaKnown RBP13.71□□□□□ -0.21
TRIM28-203ENST00000593582 FCMRO60667 390 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 AQP8O94778 261 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 SYNGR4O95473 234 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 PLGP00747 810 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-203ENST00000593582 OPN1LWP04000 364 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 OR12D1P0DN82 309 aa13.71□□□□□ -0.21
TRIM28-203ENST00000593582 UBL4AP11441 157 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms